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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Body weight Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
BDNF(2), POMC(2)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —
Oral cavity carcinoma Pemphigus vulgaris
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRA(1), HLA-DQB1(2)
0.059 0.286 6.66e-5 2.39e-4 ✓ sig. Cluster 1 →
Epithelial ovarian carcinoma Generalized lipodystrophy
2 genes
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2 of 2 corroborated by 2+ sources
FOS(2), CAV1(2)
0.059 0.286 6.66e-5 2.39e-4 ✓ sig. Cluster 71 →
Antisocial personality disorder Conduct disorder
2 genes
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DRD4(1), HTR1B(1)
0.036 0.500 6.68e-5 2.40e-4 ✓ sig. Cluster 57 →
Bone fracture Glomerulonephritis
5 genes
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1 of 5 corroborated by 2+ sources
TPCN2(1), ESR1(3), CCDC102B(1), DOK6(1), ACAP2(1)
0.031 0.074 6.81e-5 2.44e-4 ✓ sig. —
Basal ganglia disease Tremor
2 genes
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2 of 2 corroborated by 2+ sources
CYP2D6(2), DRD3(3)
0.074 0.154 6.87e-5 2.46e-4 ✓ sig. —
Congenital epicanthus Pancytopenia
2 genes
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0.074 0.143 6.94e-5 2.49e-4 ✓ sig. —
Avascular necrosis of bone Spondylometaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(5), TRPV4(5)
0.074 0.143 6.94e-5 2.49e-4 ✓ sig. Cluster 21 →
Osteonecrosis of medial femoral condyle Spondylometaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(5), TRPV4(5)
0.074 0.143 6.94e-5 2.49e-4 ✓ sig. Cluster 21 →
Severe congenital neutropenia Tubulointerstitial kidney disease
2 genes
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1 of 2 corroborated by 2+ sources
SEC61A1(4), RUVBL1(1)
0.067 0.222 6.97e-5 2.50e-4 ✓ sig. —
Aniridia Keratitis
2 genes
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2 of 2 corroborated by 2+ sources
ELP4(5), PAX6(6)
0.067 0.222 6.97e-5 2.50e-4 ✓ sig. —
Penile hypospadia Polymicrogyria
2 genes
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1 of 2 corroborated by 2+ sources
FIG4(3), PEX1(1)
0.063 0.250 7.04e-5 2.52e-4 ✓ sig. —
Dry eye syndrome Polymyositis
3 genes
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2 of 3 corroborated by 2+ sources
THSD7A(1), IL1B(2), IL6(2)
0.039 0.136 7.05e-5 2.52e-4 ✓ sig. Cluster 25 →
Cushing's disease Potassium deficiency
2 genes
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POMC(1), NR3C1(1)
0.071 0.182 7.05e-5 2.53e-4 ✓ sig. —
Brain disease West syndrome
3 genes
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3 of 3 corroborated by 2+ sources
KCNQ2(2), TSC2(2), TSC1(2)
0.043 0.100 7.28e-5 2.61e-4 ✓ sig. —
Charcot-marie-tooth disease Giant axonal neuropathy
2 genes
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2 of 2 corroborated by 2+ sources
GAN(7), DCAF8(6)
0.015 1.000 7.29e-5 2.61e-4 ✓ sig. —
Growth disorder Hemolysis
2 genes
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HMOX1(1), ATP7A(1)
0.050 0.333 7.49e-5 2.68e-4 ✓ sig. —
C1q deficiency Stevens-johnson syndrome
2 genes
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2 of 2 corroborated by 2+ sources
C1QA(5), C1QC(5)
0.025 0.667 7.57e-5 2.71e-4 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Irritant dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
0.065 0.222 7.63e-5 2.73e-4 ✓ sig. —
Congenital vertebral-cardiac-renal anomalies syndrome Hyperopia
2 genes
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2 of 2 corroborated by 2+ sources
KYNU(3), NADSYN1(3)
0.025 0.667 7.77e-5 2.78e-4 ✓ sig. Cluster 386 →
Hydrops fetalis Lymphatic malformation
2 genes
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2 of 2 corroborated by 2+ sources
CELSR1(4), PIEZO1(5)
0.071 0.154 7.84e-5 2.80e-4 ✓ sig. —
Down syndrome Transposition of the great arteries
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), SLC19A1(2)
0.069 0.182 7.88e-5 2.82e-4 ✓ sig. Cluster 113 →
Ataxia Childhood absence epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
GABRA1(2), SLC2A1(3)
0.067 0.200 7.92e-5 2.83e-4 ✓ sig. Cluster 47 →
Hyperemia Secondary parkinson disease
2 genes
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2 of 2 corroborated by 2+ sources
NOS2(2), CNR2(2)
0.071 0.143 8.01e-5 2.86e-4 ✓ sig. —
Lymphoblastic leukemia Post-operative stroke
2 genes
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TP63(1), RYR2(1)
0.033 0.500 8.04e-5 2.87e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.