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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cryptogenic west syndrome Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(7), TSC1(7)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
Aortic arch syndrome Pemphigus
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRB1(2), IL2(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 1 →
Calcium metabolism disorders Hypocalcemia
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(6), CASR(7)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
C1 esterase inhibitor deficiency Complement pathway abnormality
2 genes
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C2(1), C4B(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
Cervical intraepithelial neoplasia Obstructive asthma
2 genes
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0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 1 →
Posterior polar cataract Sutural cataract
2 genes
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2 of 2 corroborated by 2+ sources
MIP(3), CRYBA1(2)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 43 →
Cutaneous mastocytosis Sickle cell anemia
3 genes
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2 of 3 corroborated by 2+ sources
HBE1(2), HBG2(2), OR51B5(1)
0.070 0.176 3.60e-6 1.92e-5 ✓ sig. Cluster 235 →
Gaucher disease Hereditary parkinson disease
3 genes
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3 of 3 corroborated by 2+ sources
SNCA(4), PSAP(7), GBA1(7)
0.070 0.176 3.60e-6 1.92e-5 ✓ sig. —
Conotruncal cardiac defect Double outlet right ventricle
3 genes
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3 of 3 corroborated by 2+ sources
ZFPM2(2), NKX2-5(5), GDF1(2)
0.043 0.375 3.60e-6 1.92e-5 ✓ sig. —
Clear cell renal cell carcinoma Urinary bladder cancer
5 genes
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TERT(1), CDKAL1(1), MAD1L1(1), MYNN(1), ACTRT3(1)
0.043 0.091 3.66e-6 1.95e-5 ✓ sig. —
Cerebellar atrophy Periodic paralysis
2 genes
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ATP6(1), TBC1D24(1)
0.065 1.000 3.67e-6 1.95e-5 ✓ sig. —
Hypomyelinating leukodystrophy Tremor-ataxia-central hypomyelination syndrome
2 genes
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2 of 2 corroborated by 2+ sources
POLR3B(5), POLR3A(4)
0.065 1.000 3.67e-6 1.95e-5 ✓ sig. —
Hepatocellular carcinoma Polycystic ovary syndrome
26 genes
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24 of 26 corroborated by 2+ sources
AKR1C2(2), CSMD1(2), FST(2), YAP1(2), PPARG(2), RUNX3(2), RACGAP1(2), CYP1A1(2), ANLN(2), ASPM(2), CD274(2), AZGP1(3) +14 more
0.031 0.115 3.67e-6 1.95e-5 ✓ sig. Cluster 67 →
Appendicitis Hemophilia a
3 genes
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2 of 3 corroborated by 2+ sources
F2(1), IL10(2), IFNG(2)
0.068 0.188 3.67e-6 1.95e-5 ✓ sig. —
Focal cortical dysplasia Hemimegalencephaly
2 genes
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1 of 2 corroborated by 2+ sources
MTOR(4), RHEB(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. —
Hepatic veno occlusive disease Porphyria cutanea tarda
2 genes
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1 of 2 corroborated by 2+ sources
HFE(2), GSTM1(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 196 →
Hereditary hemorrhagic telangiectasia Klippel-trenaunay syndrome
2 genes
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RASA1(1), CCNH(1)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 40 →
Epidermal nevus Follicular thyroid cancer
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(3), HRAS(3)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 18 →
Gingival diseases Prostatic hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
PDGFB(2), FGF7(2)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 406 →
Epidermal nevus Nonmedullary thyroid cancer
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(4), HRAS(4)
0.154 0.286 3.72e-6 1.97e-5 ✓ sig. Cluster 18 →
Myelomonocytic leukemia noonan syndrome with multiple lentigines
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), PTPN11(4)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 42 →
Brain edema Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYLK(2), MYL9(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Apert syndrome Martsolf syndrome
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 48 →
Alcoholic hepatitis Esotropia
2 genes
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1 of 2 corroborated by 2+ sources
TNF(2), CXCL8(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 76 →
Endometrial hyperplasia Li-fraumeni syndrome
2 genes
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2 of 2 corroborated by 2+ sources
TP53(7), CDKN2A(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. Cluster 3 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.