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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Hemoglobin m disease Polycythemia vera
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(4), HBB(5)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 72 →
Polycythemia vera Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBB(5)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 72 →
progressive myoclonus epilepsy Unverricht-lundborg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCARB2(3), PRICKLE1(3)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 329 →
Acute disseminated encephalomyelitis Pulmonary alveolar proteinosis
2 genes
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1 of 2 corroborated by 2+ sources
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 1 →
Ellis-van creveld syndrome Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(7), EVC2(7)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. Cluster 289 →
Intestinal perforation Optic neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
NOS3(2), IFNA2(1)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. —
Anencephaly Hydrolethalus syndrome
2 genes
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1 of 2 corroborated by 2+ sources
HYLS1(7), PUS3(1)
0.182 0.667 9.11e-7 5.37e-6 ✓ sig. —
Iron metabolism disorder Neurodegeneration with brain iron accumulation
3 genes
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3 of 3 corroborated by 2+ sources
CP(4), FTL(4), FTH1(5)
0.088 0.214 9.12e-7 5.37e-6 ✓ sig. —
Hemorrhage Platelet disorder
3 genes
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3 of 3 corroborated by 2+ sources
ITGB3(2), FERMT3(2), STXBP2(2)
0.086 0.231 9.42e-7 5.55e-6 ✓ sig. —
Pancreatic ductal carcinoma Uterine neoplasms
4 genes
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NOTCH1(1), VEGFA(1), KRAS(1), HES1(1)
0.061 0.129 9.46e-7 5.57e-6 ✓ sig. —
Autoimmune hepatitis Hyperplasia
4 genes
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4 of 4 corroborated by 2+ sources
LEP(2), TGFB1(2), IL13(2), IL9(2)
0.061 0.129 9.46e-7 5.57e-6 ✓ sig. —
Membranous glomerulonephritis Small cell lung carcinoma
5 genes
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2 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-B(1), C6orf15(1), SFTA2(1)
0.042 0.161 9.71e-7 5.71e-6 ✓ sig. —
Genetic predisposition to disease Testicular neoplasms
3 genes
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ERCC1(1), ERCC4(1), BAP1(1)
0.057 0.429 9.86e-7 5.80e-6 ✓ sig. —
Hemophilia a Hemophilia b
2 genes
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1 of 2 corroborated by 2+ sources
F2(1), F9(7)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Congenital malformation syndromes predominantly involving limbs Vacterl association
2 genes
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DLX5(1), SMOC1(1)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. Cluster 249 →
ehlers-danlos syndrome, classic type Loeys-dietz syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COL5A1(2), COL5A2(2)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Encephalopathy due to mitochondrial and peroxisomal fission defect Mitochondrial encephalomyopathy
2 genes
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2 of 2 corroborated by 2+ sources
DNM1L(4), MFF(2)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Combined osteogenesis imperfecta and ehlers-danlos syndrome Dentinogenesis imperfecta
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.118 1.000 1.01e-6 5.95e-6 ✓ sig. —
Aortic stenosis Neoplasms
5 genes
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ARHGAP24(1), FADS1(1), FADS2(1), MYRF(1), TMEM258(1)
0.049 0.106 1.03e-6 6.02e-6 ✓ sig. —
Cachexia Hepatolenticular degeneration
3 genes
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2 of 3 corroborated by 2+ sources
TNF(2), IL6(2), CXCL8(1)
0.081 0.250 1.05e-6 6.15e-6 ✓ sig. Cluster 76 →
Anti-neutrophil antibody associated vasculitis Granulomatosis with polyangiitis
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DPB1(3), HLA-DPA1(3), PRTN3(4)
0.086 0.214 1.05e-6 6.15e-6 ✓ sig. —
Fanconi anemia Pituitary stalk interruption syndrome
4 genes
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4 of 4 corroborated by 2+ sources
FANCD2(7), FANCA(7), FANCG(6), SLX4(8)
0.060 0.129 1.05e-6 6.17e-6 ✓ sig. —
Nasal polyp Selective iga deficiency disease
4 genes
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FOXP1(1), HLA-DQA1(1), CLEC16A(1), GATA3(1)
0.060 0.129 1.05e-6 6.17e-6 ✓ sig. —
46,xy disorder of sex developmen Male pseudohypopituitarism
2 genes
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2 of 2 corroborated by 2+ sources
AKR1C2(3), AKR1C4(3)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. Cluster 344 →
Arima syndrome Encephalocele
2 genes
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CC2D2A(1), CEP290(1)
0.200 0.500 1.06e-6 6.21e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.