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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glanzmann thrombasthenia Macrothrombocytopenia
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(8), ITGA2B(8)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 33 →
Anaplasia Ductal carcinoma
2 genes
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CA9(1), HIF1A(1)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 124 →
Atelis syndrome Mosaic variegated aneuploidy
2 genes
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2 of 2 corroborated by 2+ sources
SLF2(4), SMC5(4)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. —
Benign epithelial tumor of salivary glands Silver-russell syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HMGA2(6), PLAG1(5)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. —
Congenital neck anomaly Deglutition disorder
2 genes
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RIF1(1), NEB(1)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 51 →
Cushing's disease Pituitary adenoma
2 genes
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2 of 2 corroborated by 2+ sources
AIP(3), CDH23(2)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. —
Combined saposin deficiency Retinitis pigmentosa-deafness syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(3), CDH23(1)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 118 →
Transcobalamin deficiency Vitamin b12 deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(7), TCN1(2)
0.167 1.000 4.64e-7 2.90e-6 ✓ sig. Cluster 106 →
Congenital malformation syndromes associated with short stature Non-immune hydrops fetalis
3 genes
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PTPN11(1), LZTR1(1), RIT1(1)
0.061 0.500 4.64e-7 2.90e-6 ✓ sig. Cluster 42 →
Clonal hematopoiesis Kidney cancer
6 genes
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RTEL1(1), TERT(1), TTC28(1), ITPR2(1), ATM(1), STN1(1)
0.045 0.107 4.62e-7 2.90e-6 ✓ sig. —
Polyarticular juvenile idiopathic arthritis Selective iga deficiency disease
4 genes
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1 of 4 corroborated by 2+ sources
FAS(1), IL2(1), IL21(1), PTPN2(3)
0.067 0.129 4.65e-7 2.90e-6 ✓ sig. —
Sezary syndrome Small cell lung carcinoma
5 genes
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2 of 5 corroborated by 2+ sources
PTEN(1), TP53(2), SMARCA4(1), CREBBP(1), RB1(4)
0.044 0.185 4.70e-7 2.93e-6 ✓ sig. Cluster 3 →
Autoimmune musculoskeletal system disorder Crest syndrome
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DRB1(2), STAT4(1), TNPO3(1)
0.097 0.250 4.77e-7 2.97e-6 ✓ sig. —
Ataxia Idiopathic generalized epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
GABRA1(3), CACNB4(2), SLC2A1(2)
0.097 0.250 4.77e-7 2.97e-6 ✓ sig. Cluster 47 →
Granulomatosis with polyangiitis Graves ophthalmopathy
3 genes
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2 of 3 corroborated by 2+ sources
IL10(1), CTLA4(2), PTPN22(2)
0.100 0.214 4.84e-7 3.02e-6 ✓ sig. Cluster 147 →
Lymphoma Myelodysplastic syndrome
5 genes
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CDKN2B(1), IRF4(1), KRAS(1), CFLAR(1), EZH2(1)
0.053 0.109 4.90e-7 3.06e-6 ✓ sig. —
Retinal detachment Retinitis punctata albescens
3 genes
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2 of 3 corroborated by 2+ sources
EYS(1), RDH5(3), RHO(2)
0.060 0.500 4.96e-7 3.09e-6 ✓ sig. —
Henoch schoenlein purpura Pancreatitis
4 genes
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2 of 4 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), CCL2(1), IL1RN(1)
0.056 0.222 4.97e-7 3.09e-6 ✓ sig. —
Hemangiosarcoma Osteosarcoma
4 genes
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1 of 4 corroborated by 2+ sources
TP53(2), VEGFA(1), JUN(1), MYC(1)
0.056 0.222 4.97e-7 3.09e-6 ✓ sig. Cluster 3 →
Bestrophinopathy Vitelliform macular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
BEST1(7), PRPH2(3)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Paroxysmal dyskinesia Paroxysmal nonkinesigenic dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(3), KCNA1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 58 →
Intestinal pseudo-obstruction Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH11(4), ACTG2(6)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 220 →
Dysfibrinogenemia Hyper-immunoglobulin m syndrome
2 genes
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CD40LG(1), UNG(1)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Congenital short qt syndrome Paroxysmal atrial fibrillation
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ1(2), CACNA2D1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Craniofacial ulnar renal syndrome Oculopalatosekeletal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 353 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.