Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lamellar cataract Posterior polar cataract
3 genes
Show details
3 of 3 corroborated by 2+ sources
CRYAB(2), MIP(3), CRYBA1(2)
0.176 0.375 1.52e-8 1.20e-7 ✓ sig. Cluster 43 →
Double outlet right ventricle Transposition of the great arteries
3 genes
Show details
1 of 3 corroborated by 2+ sources
CFC1(1), CERS1(1), GDF1(2)
0.176 0.375 1.52e-8 1.20e-7 ✓ sig. Cluster 113 →
Cole-carpenter syndrome Osteogenesis imperfecta
3 genes
Show details
3 of 3 corroborated by 2+ sources
CRTAP(7), P4HB(6), SEC24D(6)
0.075 1.000 1.50e-8 1.19e-7 ✓ sig. Cluster 68 →
Bruck syndrome Osteogenesis imperfecta
3 genes
Show details
3 of 3 corroborated by 2+ sources
PLOD2(6), FKBP10(6), COL1A2(7)
0.075 1.000 1.50e-8 1.19e-7 ✓ sig. —
46,xx ovotesticular disorder of sex development 46,xy gonadal dysgenesis
3 genes
Show details
1 of 3 corroborated by 2+ sources
NR5A1(2), SOX9(1), SRY(1)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. Cluster 38 →
Penile disease Urinary system disease
3 genes
Show details
SLC9A9(1), LRRC75A(1), ZNF287(1)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. Cluster 122 →
Breast implant-associated anaplastic large cell lymphoma Hereditary breast and ovarian cancer syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
TP53(1), BRCA2(4), BRCA1(4)
0.158 0.500 1.49e-8 1.18e-7 ✓ sig. —
Cystic kidney disease Polycystic kidney disease
5 genes
Show details
2 of 5 corroborated by 2+ sources
CC2D2A(1), PKD1(8), CEP290(1), MKS1(1), ANKS6(2)
0.071 0.192 1.49e-8 1.18e-7 ✓ sig. —
Blood coagulation disorder Vascular disease
5 genes
Show details
3 of 5 corroborated by 2+ sources
MTHFR(2), ABO(1), SLC19A2(1), F5(3), VKORC1(2)
0.069 0.208 1.46e-8 1.16e-7 ✓ sig. —
Berylliosis Urticaria
4 genes
Show details
1 of 4 corroborated by 2+ sources
HLA-DRB1(1), TNF(1), TGFB1(1), HLA-DPB1(3)
0.075 0.400 1.44e-8 1.14e-7 ✓ sig. —
Frontotemporal dementia Frontotemporal dementia with motor neuron disease
4 genes
Show details
4 of 4 corroborated by 2+ sources
GRN(3), C9orf72(4), FUS(2), TARDBP(3)
0.062 0.500 1.44e-8 1.14e-7 ✓ sig. Cluster 102 →
Growth hormone deficiency Hypogonadism
6 genes
Show details
4 of 6 corroborated by 2+ sources
IL17RD(1), TACR3(3), TAC3(2), GNRH1(2), KISS1R(1), GNRHR(2)
0.057 0.176 1.43e-8 1.13e-7 ✓ sig. Cluster 54 →
Digestive system disease Diverticulitis
6 genes
Show details
ARHGAP15(1), CCDC190(1), COLQ(1), SLC35F3(1), ABO(1), CALCB(1)
0.052 0.214 1.40e-8 1.11e-7 ✓ sig. —
Congenital heart defects Hypoplastic left heart syndrome
5 genes
Show details
2 of 5 corroborated by 2+ sources
TBX1(2), FOXP1(1), MYH6(2), MYH7(1), ETV2(1)
0.060 0.278 1.37e-8 1.09e-7 ✓ sig. Cluster 111 →
Diabetic retinopathy Periodontitis
13 genes
Show details
3 of 13 corroborated by 2+ sources
KCNK1(1), RBFOX1(1), TCF7L2(1), TENM2(1), PPARG(1), IL6(1), GSTM1(1), FTO(1), MMP9(2), ANGPT1(2), CRP(2), CCND2(1) +1 more
0.042 0.082 1.37e-8 1.09e-7 ✓ sig. —
Hereditary atrial fibrillation Sick sinus syndrome
4 genes
Show details
4 of 4 corroborated by 2+ sources
KCNJ5(3), PITX2(2), SCN5A(7), TTN(2)
0.103 0.222 1.37e-8 1.09e-7 ✓ sig. Cluster 4 →
Conduction disorder of the heart Sick sinus syndrome
4 genes
Show details
3 of 4 corroborated by 2+ sources
MYH6(3), SCN5A(6), TTN(2), ANK2(1)
0.103 0.222 1.37e-8 1.09e-7 ✓ sig. Cluster 4 →
Focal epilepsy Progressive myoclonic epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
DEPDC5(3), NPRL2(4), NPRL3(4)
0.115 0.750 1.33e-8 1.06e-7 ✓ sig. —
Bullous pemphigoid Lymphoma
5 genes
Show details
2 of 5 corroborated by 2+ sources
0.069 0.217 1.28e-8 1.02e-7 ✓ sig. Cluster 1 →
Cleft lip Lacrimoauriculodentodigital syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
FGFR3(6), FGF10(6), FGFR2(4)
0.079 1.000 1.28e-8 1.01e-7 ✓ sig. —
Cutaneous lupus erythematosus Interstitial cystitis
4 genes
Show details
0.083 0.364 1.27e-8 1.01e-7 ✓ sig. Cluster 1 →
Latent autoimmune diabetes in adults Uveomeningoencephalitic syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DQB1(2), PTPN22(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Uveomeningoencephalitic syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), STAT4(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 1 →
Eye neoplasms Skin hair eye pigmentation variation
3 genes
Show details
3 of 3 corroborated by 2+ sources
HERC2(2), OCA2(2), SLC24A5(2)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. Cluster 298 →
Congenital aneurysm of ascending aorta Megacystis microcolon intestinal hypoperistalsis syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
MYH11(5), NDE1(1), MYLK(6)
0.176 0.429 1.26e-8 1.00e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.