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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Combined cellular and humoral immune defects with granulomas Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(5), RAG2(5)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 173 →
Combined immunodeficiency with skin granulomas Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(5), RAG2(5)
0.182 1.000 3.80e-7 2.39e-6 ✓ sig. Cluster 173 →
Brain disease Tuberous sclerosis complex
3 genes
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3 of 3 corroborated by 2+ sources
IFNG(4), TSC2(7), TSC1(7)
0.065 0.500 3.75e-7 2.39e-6 ✓ sig. —
Ciliopathy Congenital cystic kidney disease
3 genes
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3 of 3 corroborated by 2+ sources
TMEM231(3), B9D1(3), TXNDC15(3)
0.041 0.750 3.75e-7 2.39e-6 ✓ sig. Cluster 8 →
Gastrointestinal stromal tumor Medulloblastoma
5 genes
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4 of 5 corroborated by 2+ sources
SMO(2), PTCH1(1), PDGFRA(4), SUFU(5), PTCH2(3)
0.054 0.106 3.67e-7 2.34e-6 ✓ sig. —
Eosinophilia Nasal polyp
6 genes
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4 of 6 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), CLEC16A(1), GATA3(3), TSLP(3), WDR36(1)
0.041 0.154 3.47e-7 2.22e-6 ✓ sig. —
Myasthenia gravis Oropharyngeal cancer
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), CTLA4(1), HLA-B(2)
0.053 0.132 3.45e-7 2.20e-6 ✓ sig. —
Night blindness, congenital stationary Retinal degeneration
4 genes
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4 of 4 corroborated by 2+ sources
PDE6B(3), RHO(3), GNAT1(4), RPGR(2)
0.068 0.160 3.44e-7 2.20e-6 ✓ sig. —
Nonmedullary thyroid cancer Thyroid cancer
3 genes
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3 of 3 corroborated by 2+ sources
FOXE1(4), HABP2(3), MINPP1(2)
0.077 0.429 3.42e-7 2.19e-6 ✓ sig. —
Craniosynostosis Loeys-dietz syndrome
4 genes
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2 of 4 corroborated by 2+ sources
FBN1(1), FBN2(1), TGFBR1(6), SMAD6(4)
0.056 0.250 3.42e-7 2.19e-6 ✓ sig. —
Kidney cancer Lipoma
4 genes
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TERT(1), EXO1(1), STN1(1), ACTRT3(1)
0.044 0.333 3.41e-7 2.18e-6 ✓ sig. —
Brain disease Cognition disorder
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), CDK5R1(2), SLC1A1(2), TSC1(2), OTC(2)
0.054 0.119 3.38e-7 2.16e-6 ✓ sig. Cluster 351 →
Hypotension Panic disorder
5 genes
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5 of 5 corroborated by 2+ sources
INS(2), CRH(2), MAOA(2), ADORA2A(2), ADRA2A(2)
0.052 0.147 3.38e-7 2.16e-6 ✓ sig. —
Pancreatic neoplasms Testicular germ cell tumor
7 genes
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4 of 7 corroborated by 2+ sources
HNF1B(2), TERT(2), STK11(2), MMP2(1), ALOX5(1), SUGCT(2), ALOX12B(1)
0.041 0.117 3.38e-7 2.16e-6 ✓ sig. —
Clear cell renal cell carcinoma Toxic nodular goiter
4 genes
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TERT(1), INSR(1), SLK(1), STN1(1)
0.058 0.235 3.35e-7 2.15e-6 ✓ sig. —
Cartilage disease Lymphedema
3 genes
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1 of 3 corroborated by 2+ sources
GATA2(3), HLA-DQA1(1), HLA-DRB1(1)
0.107 0.214 3.33e-7 2.13e-6 ✓ sig. Cluster 1 →
Avascular necrosis of bone Hemophilia a
3 genes
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F2(1), PLAT(1), TFPI(1)
0.107 0.214 3.33e-7 2.13e-6 ✓ sig. —
Chorioretinopathy with microcephaly Microcephaly
3 genes
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3 of 3 corroborated by 2+ sources
TUBGCP6(6), PLK4(6), TUBGCP4(6)
0.028 1.000 3.17e-7 2.03e-6 ✓ sig. —
Henoch schoenlein purpura Narcolepsy
4 genes
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3 of 4 corroborated by 2+ sources
0.061 0.222 3.16e-7 2.02e-6 ✓ sig. Cluster 1 →
Hirschsprung disease Waardenburg-shah syndrome
3 genes
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3 of 3 corroborated by 2+ sources
EDNRB(6), EDN3(6), SOX10(3)
0.043 0.750 3.14e-7 2.01e-6 ✓ sig. —
Familial temporal lobe epilepsy Temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
CPA6(5), RELN(4), GAL(4)
0.079 0.429 3.12e-7 2.00e-6 ✓ sig. —
Ciliary dyskinesia, with or without situs inversus Situs inversus
3 genes
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DNAH5(1), DNAH11(1), DNAAF19(1)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. —
Autoimmune lymphoproliferative disorder Splenomegaly
3 genes
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3 of 3 corroborated by 2+ sources
FAS(6), KRAS(2), NRAS(3)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. Cluster 18 →
Deglutition disorder Visual disorder
3 genes
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3 of 3 corroborated by 2+ sources
TSEN2(2), TSEN54(2), TSEN34(2)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. Cluster 51 →
Congenital pain insensitivity Paroxysmal extreme pain disorder
2 genes
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2 of 2 corroborated by 2+ sources
SCN11A(2), SCN9A(5)
0.286 0.500 3.04e-7 1.95e-6 ✓ sig. Cluster 164 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.