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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Charcot-marie-tooth disease Navajo neurohepatopathy
3 genes
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1 of 3 corroborated by 2+ sources
UCN(1), MPV17(6), TRIM54(1)
0.023 1.000 6.16e-7 3.76e-6 ✓ sig. —
Dermatomyositis Irritant dermatitis
3 genes
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3 of 3 corroborated by 2+ sources
C2(2), HLA-DPB1(3), HLA-DPA1(3)
0.079 0.333 6.16e-7 3.76e-6 ✓ sig. Cluster 25 →
Hypohidrotic ectodermal dysplasia Tooth agenesis
3 genes
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3 of 3 corroborated by 2+ sources
LRP6(6), WNT10A(7), EDARADD(3)
0.065 0.429 6.09e-7 3.71e-6 ✓ sig. —
Melas syndrome Mitochondrial myopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL1A(2), IL1B(2), CYTB(2)
0.097 0.200 6.05e-7 3.69e-6 ✓ sig. Cluster 32 →
Contact dermatitis Lung disease
7 genes
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7 of 7 corroborated by 2+ sources
VEGFA(2), GSTP1(2), CCN2(2), IL18(2), DEFB1(2), NQO1(2), MMP8(2)
0.041 0.093 5.83e-7 3.56e-6 ✓ sig. —
Kidney neoplasms Mouth neoplasms
5 genes
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ATP7B(1), SOD2(1), PTGS2(1), NDRG1(1), TSC2(1)
0.051 0.125 5.75e-7 3.51e-6 ✓ sig. Cluster 5 →
Cerebral hemorrhage Learning disorders
4 genes
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4 of 4 corroborated by 2+ sources
APP(2), VEGFA(2), BCL2(2), HMOX1(2)
0.065 0.138 5.73e-7 3.50e-6 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Macrogyria
4 genes
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CASK(1), SEPSECS(1), KIAA0586(1), TUBA1A(1)
0.065 0.138 5.73e-7 3.50e-6 ✓ sig. Cluster 110 →
Endometrial hyperplasia Sezary syndrome
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), TP53(2), CDKN2A(2)
0.086 0.300 5.72e-7 3.50e-6 ✓ sig. Cluster 3 →
Delirium Hepatolenticular degeneration
3 genes
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3 of 3 corroborated by 2+ sources
APOE(3), IL6(2), CXCL8(2)
0.086 0.300 5.72e-7 3.50e-6 ✓ sig. Cluster 76 →
Distal muscular dystrophy Neuromuscular disease
3 genes
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LDB3(1), MYH7(1), TTN(1)
0.067 0.429 5.64e-7 3.45e-6 ✓ sig. —
Cerebrofacioarticular syndrome Periventricular nodular heterotopia
2 genes
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2 of 2 corroborated by 2+ sources
FAT4(3), DCHS1(3)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Coenzyme q10 deficiency Primary coenzyme q10 deficiency
2 genes
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2 of 2 corroborated by 2+ sources
COQ6(5), COQ7(5)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema Congenital nonspherocytic hemolytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
G6PD(6), IKBKG(2)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 87 →
Autoinflammatory disease, systemic, x-linked Congenital nonspherocytic hemolytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
G6PD(6), IKBKG(3)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 87 →
Bloch sulzberger syndrome Congenital nonspherocytic hemolytic anemia
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(6), IKBKG(1)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 87 →
Congenital structural myopathy X-linked centronuclear myopathy
2 genes
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1 of 2 corroborated by 2+ sources
MTM1(2), DNM2(1)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Curry-hall syndrome Majewski syndrome
2 genes
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2 of 2 corroborated by 2+ sources
EVC(2), EVC2(2)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Periventricular nodular heterotopia Van maldergem syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FAT4(5), DCHS1(6)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Camos syndrome Galloway-mowat syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ZNF592(2), WDR73(8)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 30 →
Congenital hereditary endothelial dystrophy Hereditary corneal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
OVOL2(2), SLC4A11(4)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 75 →
Atrioventricular septal defect Pancreatic hypoplasia-diabetes-congenital heart disease syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GATA4(6), GATA6(6)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 60 →
Atrioventricular septal defect Partial atrioventricular canal defect
2 genes
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2 of 2 corroborated by 2+ sources
GATA4(5), CRELD1(6)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 60 →
Microphthalmia with retinitis pigmentosa and ocular anomalies Nanophthalmos
2 genes
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1 of 2 corroborated by 2+ sources
MFRP(6), C1QTNF5(1)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 56 →
Congenital short bowel syndrome Intestinal obstruction
2 genes
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2 of 2 corroborated by 2+ sources
FLNA(4), CLMP(5)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.