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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Esotropia Extrinsic allergic alveolitis
2 genes
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1 of 2 corroborated by 2+ sources
SOD2(2), TNF(1)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Iron deficiency anemia Microcytic anemia
2 genes
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2 of 2 corroborated by 2+ sources
SLC11A2(6), TMPRSS6(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 227 →
Alport syndrome, x-linked Leiomyoma
2 genes
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2 of 2 corroborated by 2+ sources
COL4A5(4), COL4A6(2)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. Cluster 49 →
Anti-glomerular basement membrane disease Berylliosis
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Perisylvian syndrome Tubulinopathy
2 genes
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2 of 2 corroborated by 2+ sources
TUBB2B(3), TUBA1A(3)
0.154 0.500 2.28e-6 1.26e-5 ✓ sig. —
Eating disorder Vascular dementia
7 genes
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1 of 7 corroborated by 2+ sources
CRBN(1), MACROD2(1), MGMT(1), NALF1(1), TMEM106B(2), SORCS2(1), KCNK5(1)
0.036 0.097 2.19e-6 1.21e-5 ✓ sig. Cluster 69 →
Coronary restenosis Heart valve prolapse
3 genes
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1 of 3 corroborated by 2+ sources
ACE(2), SPP1(1), ITGB2(1)
0.073 0.214 2.16e-6 1.19e-5 ✓ sig. —
Combined osteogenesis imperfecta and ehlers-danlos syndrome Skeletal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Anterior segment dysgenesis Congenital cataract microcornea with corneal opacity
2 genes
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2 of 2 corroborated by 2+ sources
ATOH7(3), PXDN(5)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Congenital clubfoot Congenital hypoplasia of femur
2 genes
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PLOD2(1), INPP5E(1)
0.083 1.000 2.13e-6 1.18e-5 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Congenital hypoplasia of kidney
3 genes
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PAX2(1), RET(1), KAT6B(1)
0.051 0.375 2.13e-6 1.18e-5 ✓ sig. —
Gallbladder neoplasms Primary aldosteronism
3 genes
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1 of 3 corroborated by 2+ sources
B3GLCT(1), RXFP2(1), CCKAR(2)
0.077 0.188 2.09e-6 1.16e-5 ✓ sig. Cluster 143 →
Chorea Dysarthria
3 genes
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CACNA1A(1), DNMT1(1), ADCY5(1)
0.079 0.167 2.04e-6 1.13e-5 ✓ sig. —
Carcinogenesis Nasopharyngeal carcinoma
3 genes
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KRAS(1), ERBB2(1), CDKN2A(1)
0.079 0.167 2.04e-6 1.13e-5 ✓ sig. Cluster 3 →
Essential thrombocythemia Polycythemia, primary familial and congenital
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(3), JAK2(3)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Hyperbilirubinemia Rotor syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SLCO1B1(6), SLCO1B3(6)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 260 →
Deafness, aminoglycoside-induced Neuropathy, ataxia, and retinitis pigmentosa
2 genes
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ND1(1), COX1(1)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Myoclonic epilepsy with ragged red fibers Progressive external ophthalmoplegia
2 genes
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2 of 2 corroborated by 2+ sources
IL1A(2), IL1B(2)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 32 →
Benign mucous membrane pemphigoid with ocular involvement Optic neuritis
2 genes
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0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 1 →
Bouillaud’s disease Optic neuritis
2 genes
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0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Optic neuritis
2 genes
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0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid Optic neuritis
2 genes
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0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 1 →
Mitochondrial hepatopathy Progressive external ophthalmoplegia
2 genes
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2 of 2 corroborated by 2+ sources
POLG(3), TWNK(3)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Intestinal perforation Raynaud disease
2 genes
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1 of 2 corroborated by 2+ sources
NOS3(3), IFNA2(1)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. —
Bor syndrome Congenital abnormalities
2 genes
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2 of 2 corroborated by 2+ sources
EYA1(3), SIX1(3)
0.133 0.667 1.97e-6 1.10e-5 ✓ sig. Cluster 145 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.