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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Head and neck cancer Osteomyelitis
2 genes
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2 of 2 corroborated by 2+ sources
TERT(2), HLA-DQB1(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. Cluster 1 →
Headache Optic neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
CSF3(2), IFNA2(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Hepatic insufficiency Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
NFE2L2(2), KEAP1(2)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Hypertensive heart disease Osteomyelitis
2 genes
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TCF7L2(1), FTO(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Anencephaly Eye disorder
2 genes
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MTHFR(1), RPGRIP1L(1)
0.111 0.222 1.36e-5 6.60e-5 ✓ sig. —
Internet addiction disorder Language development disorders
3 genes
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2 of 3 corroborated by 2+ sources
ERBB4(1), FOXP2(3), NRXN1(3)
0.058 0.115 1.36e-5 6.60e-5 ✓ sig. Cluster 179 →
Focal glomerulosclerosis Nephrotic syndrome, steroid-resistant, autosomal recessive
2 genes
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AXDND1(1), NPHS2(1)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Angioedema Primary adrenal insufficiency
2 genes
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CUX1(1), MYL10(1)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Pancreatitis Tropical calcific pancreatitis
2 genes
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2 of 2 corroborated by 2+ sources
CTRC(4), SPINK1(6)
0.034 1.000 1.35e-5 6.54e-5 ✓ sig. —
Bouillaud’s disease Bronchitis
2 genes
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2 of 2 corroborated by 2+ sources
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. Cluster 1 →
Hypoxia Sulfur amino acid metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
ADK(2), AHCY(2)
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. —
Hypoxia Intestinal perforation
2 genes
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2 of 2 corroborated by 2+ sources
NOS3(2), NOS1(2)
0.057 0.667 1.33e-5 6.49e-5 ✓ sig. —
Eyelid disease Uterine prolapse
2 genes
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EFEMP1(1), PNPT1(1)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. Cluster 146 →
Cervical disc degenerative disorder Mitochondrial myopathy
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), TNF(2)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. —
Cervical disc degenerative disorder Gouty arthritis
2 genes
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IL1B(1), TGFB1(1)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. Cluster 180 →
Cleft lip and palate Cleft lip with or without cleft palate
2 genes
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1 of 2 corroborated by 2+ sources
CDH1(1), ARHGAP29(2)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. —
Diverticulitis Obstructive sleep apnea syndrome
4 genes
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JCAD(1), NBEA(1), SLC35F3(1), LHX8(1)
0.038 0.143 1.32e-5 6.44e-5 ✓ sig. —
Diffuse idiopathic skeletal hyperostosis Facial nerve disorder
2 genes
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CDC5L(1), SUPT3H(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Hereditary hemolytic anemia Secondary polycythemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), BPGM(2)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 105 →
Hypertrichosis Rubinstein-taybi syndrome
2 genes
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1 of 2 corroborated by 2+ sources
CREBBP(7), ASXL1(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Metachromatic leukodystrophy Retinitis pigmentosa-deafness syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(5), CDH23(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 118 →
Retinitis pigmentosa-deafness syndrome Vitreoretinal degeneration
2 genes
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CDH23(1), C10orf105(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Auricle malformation Testicular hydrocele
2 genes
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DIPK1A(1), RPL5(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 236 →
B-cell chronic lymphocytic leukemia Melanocytic nevus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), ATM(2)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Amnesia Degenerative disorder
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), IL6(2), NGF(2)
0.054 0.167 1.29e-5 6.30e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.