Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Brain edema Down syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
S100B(2), MMP9(2)
0.071 0.200 6.45e-5 2.33e-4 ✓ sig. —
Anencephaly Dandy-walker syndrome
2 genes
Show details
HYLS1(1), PUS3(1)
0.071 0.222 5.74e-5 2.33e-4 ✓ sig. —
Bladder exstrophy progressive myoclonus epilepsy
2 genes
Show details
2 of 2 corroborated by 2+ sources
GOSR2(2), NUS1(2)
0.069 0.222 6.34e-5 2.33e-4 ✓ sig. —
Congenital impairment of spermatozoa motility Spermatogenic failure, x-linked
2 genes
Show details
2 of 2 corroborated by 2+ sources
SSX1(4), USP26(3)
0.067 0.250 5.94e-5 2.33e-4 ✓ sig. Cluster 31 →
Congenital muscular dystrophy due to dystroglycanopathy Hydrocephalus
2 genes
Show details
1 of 2 corroborated by 2+ sources
CRPPA(2), POMGNT1(1)
0.063 0.286 5.73e-5 2.33e-4 ✓ sig. —
Anhedonia Dysthymic disorder
2 genes
Show details
CRH(1), SLC6A4(1)
0.063 0.286 5.73e-5 2.33e-4 ✓ sig. Cluster 156 →
Exanthema Spondylosis
2 genes
Show details
2 of 2 corroborated by 2+ sources
HLA-B(2), IL1RN(2)
0.057 0.333 5.48e-5 2.33e-4 ✓ sig. —
Appendicitis Autoimmune hepatitis
3 genes
Show details
2 of 3 corroborated by 2+ sources
F2(1), IL10(2), IFNG(2)
0.045 0.100 5.38e-5 2.33e-4 ✓ sig. —
Night blindness, congenital stationary Retinal detachment
3 genes
Show details
2 of 3 corroborated by 2+ sources
ABCA4(1), RDH5(2), RHO(3)
0.043 0.120 5.48e-5 2.33e-4 ✓ sig. —
Cerebral palsy Interferonopathy
2 genes
Show details
2 of 2 corroborated by 2+ sources
RNASEH2B(3), SAMHD1(2)
0.041 0.500 5.22e-5 2.33e-4 ✓ sig. —
Congenital cystic kidney disease Gastrointestinal stromal tumor
2 genes
Show details
2 of 2 corroborated by 2+ sources
TMEM231(2), B9D1(2)
0.040 0.500 5.45e-5 2.33e-4 ✓ sig. —
Antiphospholipid syndrome Ocular sarcoidosis
3 genes
Show details
2 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DQB1(2), FRMD4A(1)
0.039 0.150 5.52e-5 2.33e-4 ✓ sig. Cluster 1 →
Galactokinase deficiency Ocular hypertension
2 genes
Show details
2 of 2 corroborated by 2+ sources
NR3C1(2), ITGB4(2)
0.038 0.500 5.93e-5 2.33e-4 ✓ sig. Cluster 405 →
Anodontia Otosclerosis
2 genes
Show details
2 of 2 corroborated by 2+ sources
LTBP3(2), IRX5(2)
0.037 0.500 6.43e-5 2.33e-4 ✓ sig. —
MHC class II deficiency Severe combined immunodeficiency
2 genes
Show details
2 of 2 corroborated by 2+ sources
RFX5(2), RFXANK(2)
0.037 0.500 6.43e-5 2.33e-4 ✓ sig. —
Essential tremor Triple negative breast cancer
4 genes
Show details
CCDC91(1), ABHD8(1), IL20RB(1), ANKLE1(1)
0.031 0.118 5.94e-5 2.33e-4 ✓ sig. —
Congenital disorder of glycosylation Glycosylphosphatidylinositol biosynthesis defect
3 genes
Show details
3 of 3 corroborated by 2+ sources
PIGC(4), PIGW(3), PIGM(4)
0.028 0.250 5.44e-5 2.33e-4 ✓ sig. —
Male infertility acephalic spermatozoa Spermatogenic failure
2 genes
Show details
2 of 2 corroborated by 2+ sources
PMFBP1(5), SUN5(6)
0.017 1.000 5.43e-5 2.33e-4 ✓ sig. —
Male infertility teratozoospermia Spermatogenic failure
2 genes
Show details
2 of 2 corroborated by 2+ sources
CFAP251(4), CFAP91(3)
0.017 1.000 5.43e-5 2.33e-4 ✓ sig. Cluster 31 →
Deafness-infertility syndrome Spermatogenic failure
2 genes
Show details
2 of 2 corroborated by 2+ sources
STRC(5), CATSPER2(5)
0.017 1.000 5.43e-5 2.33e-4 ✓ sig. —
Hepatic veno occlusive disease with immunodeficiency Lymphocytic leukemia
2 genes
Show details
2 of 2 corroborated by 2+ sources
SP140(2), SP110(7)
0.017 1.000 5.53e-5 2.33e-4 ✓ sig. Cluster 225 →
Hemorrhagic stroke Nephrolithiasis
2 genes
Show details
PDGFA(1), FOXL3(1)
0.017 1.000 6.02e-5 2.33e-4 ✓ sig. —
Ataxia, spastic, autosomal dominant Spastic paraplegia
2 genes
Show details
1 of 2 corroborated by 2+ sources
TAPBPL(1), VAMP1(2)
0.017 1.000 6.02e-5 2.33e-4 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Patent ductus arteriosus
2 genes
Show details
2 of 2 corroborated by 2+ sources
FLNA(2), MYH11(2)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —
Diffuse gastric adenocarcinoma Urinary system neoplasms
2 genes
Show details
PSCA(1), LY6K(1)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.