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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Head and neck cancer Tongue neoplasms
2 genes
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TERT(1), HLA-DQB1(1)
0.105 0.200 1.70e-5 8.15e-5 ✓ sig. —
Mastocytosis Sickle cell anemia
3 genes
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2 of 3 corroborated by 2+ sources
HBE1(2), HBG2(2), OR51B5(1)
0.056 0.107 1.71e-5 8.18e-5 ✓ sig. Cluster 235 →
Degenerative disorder Frontotemporal dementia
4 genes
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2 of 4 corroborated by 2+ sources
PSEN1(4), MAPT(4), FUS(1), TARDBP(1)
0.041 0.100 1.71e-5 8.19e-5 ✓ sig. —
Frontotemporal dementia Generalized anxiety disorder
4 genes
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1 of 4 corroborated by 2+ sources
MAPT(5), ST18(1), TMEM106B(1), VWDE(1)
0.041 0.100 1.71e-5 8.19e-5 ✓ sig. —
Asbestosis Cervical disc degenerative disorder
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), TNF(2)
0.091 0.333 1.72e-5 8.20e-5 ✓ sig. —
Diabetes microvascular complications Substance-induced psychosis
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), SOD2(3)
0.091 0.333 1.72e-5 8.20e-5 ✓ sig. —
Brain small vessel disease Intracerebral hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(4)
0.080 0.400 1.77e-5 8.44e-5 ✓ sig. Cluster 198 →
Aortic rupture Bone neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
MMP9(2), MMP2(2)
0.080 0.400 1.77e-5 8.44e-5 ✓ sig. —
Aplasia cutis congenita Epidermolysis bullosa
2 genes
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2 of 2 corroborated by 2+ sources
PLEC(8), ITGB4(5)
0.080 0.400 1.77e-5 8.44e-5 ✓ sig. —
Aneurysm Coronary syndrome
2 genes
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CELSR2(1), LPA(1)
0.067 0.500 1.77e-5 8.46e-5 ✓ sig. —
Bladder exstrophy and epispadias complex Tetra-amelia syndrome
2 genes
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1 of 2 corroborated by 2+ sources
WNT3(7), LRRC37A2(1)
0.067 0.500 1.77e-5 8.46e-5 ✓ sig. —
Developmental delay Mitochondrial encephalopathy
2 genes
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COX3(1), FOXRED1(1)
0.050 0.667 1.78e-5 8.48e-5 ✓ sig. Cluster 32 →
Degenerative disorder Splenomegaly
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2)
0.052 0.150 1.80e-5 8.57e-5 ✓ sig. —
Charcot-Marie-Tooth disease type 2 Hereditary motor and sensory neuropathies
2 genes
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2 of 2 corroborated by 2+ sources
RAB7A(2), NEFL(2)
0.030 1.000 1.81e-5 8.63e-5 ✓ sig. Cluster 15 →
Glycogen storage disease Left ventricular disease
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), PRKAG2(3), TNNT2(4), GAA(7)
0.040 0.108 1.83e-5 8.72e-5 ✓ sig. —
Auricle malformation Byzanthine arch palate
2 genes
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FGFR2(1), EARS2(1)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Rheumatic disease Urologic neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
WWOX(2), FHIT(2)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Congenital nystagmus Oculocutaneous albinism
2 genes
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2 of 2 corroborated by 2+ sources
OCA2(6), TYR(5)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Optic neuritis Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Diabetic ketoacidosis Maturity-onset diabetes of the young (mody)
3 genes
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3 of 3 corroborated by 2+ sources
INS(6), INS-IGF2(2), PAX4(5)
0.054 0.130 1.85e-5 8.80e-5 ✓ sig. Cluster 36 →
Chiari-frommel syndrome Dyskinesia, drug-induced
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), GAD1(2)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. —
autosomal dominant polycystic kidney disease Intracranial aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), PKD2(2)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. —
Colobomatous microphthalmia Klippel-feil syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GDF6(6), GDF3(6)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. Cluster 56 →
Lymphoid leukemia Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.065 0.500 1.91e-5 9.08e-5 ✓ sig. —
Juvenile arthritis Skin disease
9 genes
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9 of 9 corroborated by 2+ sources
SMAD3(2), IL1RN(2), ALOX12(2), CD83(2), LPP(2), NR4A2(2), TNFAIP6(2), TNIK(2), UBE2E1(2)
0.030 0.069 1.91e-5 9.09e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.