Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cardiofacial dysplasia Ellis-van creveld syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
PRKACB(5), PRKACA(5)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Transcobalamin deficiency Vitamin deficiency disorder
2 genes
Show details
2 of 2 corroborated by 2+ sources
TCN2(7), TCN1(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 106 →
Glucocorticoid deficiency Primary adrenal insufficiency
2 genes
Show details
CUX1(1), MYL10(1)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Intracellular cobalamin metabolism disorder methylmalonic aciduria and homocystinuria
2 genes
Show details
2 of 2 corroborated by 2+ sources
ZNF143(2), THAP11(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 246 →
Juvenile hyperuricemic nephropathy Tubulointerstitial kidney disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
REN(5), UMOD(4)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Large cell carcinoma Small cell carcinoma
2 genes
Show details
CYP2A6(1), PYCARD(1)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Congenital arteriovenous malformation Venous malformation
2 genes
Show details
1 of 2 corroborated by 2+ sources
TEK(3), PIK3CA(1)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Arterial occlusive disease Cholesterol embolism
2 genes
Show details
2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 123 →
Arterial occlusive disease Intracranial embolism and thrombosis
2 genes
Show details
2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 123 →
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Tubulointerstitial kidney disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
APOA4(4), UMOD(4)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 23 →
Benign neonatal-infantile seizures Epilepsy of infancy with migrating focal seizures
2 genes
Show details
2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(3)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Benign recurrent intrahepatic cholestasis Intrahepatic cholestasis
2 genes
Show details
2 of 2 corroborated by 2+ sources
ATP8B1(3), ABCB11(4)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 319 →
Iron deficiency anemia Iron metabolism disorder
3 genes
Show details
2 of 3 corroborated by 2+ sources
HFE(1), TMPRSS6(3), TFRC(2)
0.100 0.300 3.02e-7 1.95e-6 ✓ sig. —
Polyarticular juvenile idiopathic arthritis Scleroderma
4 genes
Show details
4 of 4 corroborated by 2+ sources
IL2(2), HLA-DQB1(2), STAT4(4), CD247(3)
0.070 0.143 3.04e-7 1.95e-6 ✓ sig. —
Deglutition disorder Visual disorder
3 genes
Show details
3 of 3 corroborated by 2+ sources
TSEN2(2), TSEN54(2), TSEN34(2)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. Cluster 51 →
Autoimmune lymphoproliferative disorder Splenomegaly
3 genes
Show details
3 of 3 corroborated by 2+ sources
FAS(6), KRAS(2), NRAS(3)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. Cluster 18 →
Ciliary dyskinesia, with or without situs inversus Situs inversus
3 genes
Show details
DNAH5(1), DNAH11(1), DNAAF19(1)
0.103 0.273 3.07e-7 1.97e-6 ✓ sig. —
Familial temporal lobe epilepsy Temporal lobe epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
CPA6(5), RELN(4), GAL(4)
0.079 0.429 3.12e-7 2.00e-6 ✓ sig. —
Hirschsprung disease Waardenburg-shah syndrome
3 genes
Show details
3 of 3 corroborated by 2+ sources
EDNRB(6), EDN3(6), SOX10(3)
0.043 0.750 3.14e-7 2.01e-6 ✓ sig. —
Henoch schoenlein purpura Narcolepsy
4 genes
Show details
3 of 4 corroborated by 2+ sources
0.061 0.222 3.16e-7 2.02e-6 ✓ sig. Cluster 1 →
Chorioretinopathy with microcephaly Microcephaly
3 genes
Show details
3 of 3 corroborated by 2+ sources
TUBGCP6(6), PLK4(6), TUBGCP4(6)
0.028 1.000 3.17e-7 2.03e-6 ✓ sig. —
Avascular necrosis of bone Hemophilia a
3 genes
Show details
F2(1), PLAT(1), TFPI(1)
0.107 0.214 3.33e-7 2.13e-6 ✓ sig. —
Cartilage disease Lymphedema
3 genes
Show details
1 of 3 corroborated by 2+ sources
GATA2(3), HLA-DQA1(1), HLA-DRB1(1)
0.107 0.214 3.33e-7 2.13e-6 ✓ sig. Cluster 1 →
Clear cell renal cell carcinoma Toxic nodular goiter
4 genes
Show details
TERT(1), INSR(1), SLK(1), STN1(1)
0.058 0.235 3.35e-7 2.15e-6 ✓ sig. —
Pancreatic neoplasms Testicular germ cell tumor
7 genes
Show details
4 of 7 corroborated by 2+ sources
HNF1B(2), TERT(2), STK11(2), MMP2(1), ALOX5(1), SUGCT(2), ALOX12B(1)
0.041 0.117 3.38e-7 2.16e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.