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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Nonsyndromic intellectual disability syndromic intellectual disability
7 genes
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7 of 7 corroborated by 2+ sources
CRADD(4), NSUN2(4), KIF1A(3), PPM1D(2), TAOK1(3), MED23(4), NAA20(3)
0.041 0.194 3.11e-8 2.35e-7 ✓ sig. —
Congenital brain malformation Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Congenital hypoplasia of part of brain Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Microgyria Pontocerebellar hypoplasia
4 genes
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4 of 4 corroborated by 2+ sources
SEPSECS(5), CHMP1A(5), AMPD2(6), TOE1(5)
0.089 0.235 3.14e-8 2.37e-7 ✓ sig. —
Clear cell renal cell carcinoma Myeloproliferative disorder
6 genes
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1 of 6 corroborated by 2+ sources
TERT(2), MAD1L1(1), STN1(1), PMF1(1), PMF1-BGLAP(1), MYNN(1)
0.058 0.113 3.16e-8 2.39e-7 ✓ sig. —
Congenital insensitivity to pain Hereditary sensory and autonomic neuropathy
3 genes
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3 of 3 corroborated by 2+ sources
SCN11A(6), SCN9A(5), PRDM12(5)
0.130 0.500 3.18e-8 2.40e-7 ✓ sig. —
Hyperparathyroidism Rickets
3 genes
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3 of 3 corroborated by 2+ sources
VDR(2), PTH(2), PTH1R(2)
0.130 0.500 3.18e-8 2.40e-7 ✓ sig. —
Hyperinsulinemic hypoglycemia monogenic diabetes
3 genes
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3 of 3 corroborated by 2+ sources
ABCC8(4), KCNJ11(5), GCK(4)
0.158 0.300 3.25e-8 2.45e-7 ✓ sig. Cluster 36 →
Degenerative disorder Learning disorders
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2), HMOX1(2), APOD(2)
0.069 0.139 3.24e-8 2.45e-7 ✓ sig. —
Hemorrhage Venous thrombosis
4 genes
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PLAU(1), F2(1), PLAT(1), F7(1)
0.093 0.182 3.26e-8 2.46e-7 ✓ sig. Cluster 55 →
Autosomal recessive ataxia Peroxisome biogenesis disorder
3 genes
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3 of 3 corroborated by 2+ sources
PEX10(8), PEX16(8), PEX2(7)
0.111 0.600 3.32e-8 2.50e-7 ✓ sig. —
Diabetic cardiomyopathy Rhabdomyolysis
3 genes
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3 of 3 corroborated by 2+ sources
INS(2), ATP2A2(3), RYR2(3)
0.150 0.375 3.34e-8 2.52e-7 ✓ sig. Cluster 290 →
Bouillaud’s disease Narcolepsy
3 genes
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3 of 3 corroborated by 2+ sources
0.058 1.000 3.42e-8 2.58e-7 ✓ sig. Cluster 1 →
Nystagmus Strabismus
5 genes
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KIF7(1), BFSP2(1), GALC(1), GNB1(1), TYR(1)
0.068 0.147 3.50e-8 2.64e-7 ✓ sig. —
Carcinogenesis Lymphatic metastasis
4 genes
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BRAF(1), MET(1), ERBB2(1), CDKN2A(1)
0.089 0.222 3.51e-8 2.65e-7 ✓ sig. —
Chloracne Delta-beta thalassemia
3 genes
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3 of 3 corroborated by 2+ sources
HBB(4), HBD(3), HBG1(3)
0.086 0.750 3.58e-8 2.70e-7 ✓ sig. —
Aplastic anemia Asbestosis
4 genes
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2 of 4 corroborated by 2+ sources
GSTT1(2), TNF(2), EPHX1(1), GSTM1(1)
0.087 0.235 3.59e-8 2.70e-7 ✓ sig. —
Pulmonary hypertension Sleep apnea
6 genes
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6 of 6 corroborated by 2+ sources
ACE(2), NOS3(2), TNF(2), SLC6A4(2), EDN1(2), LEPR(2)
0.057 0.122 3.68e-8 2.77e-7 ✓ sig. —
Multinodular goiter Thyroid disease
5 genes
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NFIA(1), INSR(1), TG(1), FAM227B(1), MICOS10(1)
0.065 0.179 3.69e-8 2.77e-7 ✓ sig. —
Learning disorders Neurodegenerative disorder
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2), HMOX1(2), APOD(2)
0.068 0.139 3.69e-8 2.77e-7 ✓ sig. —
Cervical disc degenerative disorder Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
TNF(2), TGFB1(2), COL1A1(2)
0.125 0.500 3.74e-8 2.81e-7 ✓ sig. —
Gallbladder neoplasms Nasopharyngeal carcinoma
4 genes
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1 of 4 corroborated by 2+ sources
TP53(3), ERBB3(1), KRAS(1), ERBB2(1)
0.091 0.182 3.88e-8 2.91e-7 ✓ sig. —
Congenital neutropenia Shwachman-diamond syndrome
3 genes
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2 of 3 corroborated by 2+ sources
SRP19(1), SRP54(5), SRPRA(2)
0.136 0.429 3.90e-8 2.93e-7 ✓ sig. —
Genetic steroid-resistant nephrotic syndrome Nephrotic syndrome, idiopathic, steroid-resistant
3 genes
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3 of 3 corroborated by 2+ sources
NPHS2(2), NUP93(2), NUP205(2)
0.083 0.750 3.93e-8 2.95e-7 ✓ sig. —
Erythrocytosis Polycythemia vera
3 genes
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3 of 3 corroborated by 2+ sources
HBA1(6), HBB(5), JAK2(5)
0.150 0.333 3.94e-8 2.95e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.