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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cockayne syndrome De sanctis-cacchione syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ERCC6(7), PGBD3(1)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. —
Eosinophilic leukemia Hypereosinophilic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PDGFRA(5), FIP1L1(3)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 185 →
Congenital amegakaryocytic thrombocytopenia Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
MPL(6), THPO(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 53 →
Congenital amegakaryocytic thrombocytopenia Thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(7), THPO(6)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 53 →
Methemoglobinemia methemoglobinemia, alpha type
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(5), HBA2(2)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Methemoglobinemia
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(5), HBA2(2)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 72 →
Axenfeld anomaly Axenfeld-rieger syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FOXC1(6), PITX2(6)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 253 →
Axenfeld-rieger syndrome Iridogoniodysgenesis
2 genes
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2 of 2 corroborated by 2+ sources
FOXC1(6), PITX2(6)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 253 →
Benign infantile epilepsy Benign neonatal-infantile seizures
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(2)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 165 →
Eyelid disease Visual system disorder
2 genes
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EFEMP1(1), PNPT1(1)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 146 →
Turnpenny-fry syndrome Wolfram syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PCGF2(5), CISD3(1)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. —
Hydatidiform mole Partial hydatidiform mole
2 genes
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2 of 2 corroborated by 2+ sources
NLRP7(6), KHDC3L(6)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. —
Amegakaryocytic thrombocytopenia Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
MPL(5), THPO(6)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 53 →
Amegakaryocytic thrombocytopenia Thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
MPL(5), THPO(4)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 53 →
Aortic arch syndrome Thromboangiitis obliterans
2 genes
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HLA-DRB1(1), HLA-A(1)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 1 →
Ischemic heart disease Preeclampsia
10 genes
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10 of 10 corroborated by 2+ sources
ACE(2), SERPINE1(2), NOS3(2), HMOX1(2), MTHFR(2), FTO(2), FURIN(2), EDN1(2), CLCN6(2), DDAH2(2)
0.039 0.102 1.25e-7 8.69e-7 ✓ sig. Cluster 139 →
Amenorrhea Congenital adrenal hyperplasia
3 genes
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3 of 3 corroborated by 2+ sources
CYP17A1(3), CYP19A1(2), POR(5)
0.125 0.273 1.23e-7 8.53e-7 ✓ sig. Cluster 346 →
Graft-versus-host disease Mucositis
3 genes
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3 of 3 corroborated by 2+ sources
IL10(3), MTHFR(2), IL1RN(2)
0.111 0.375 1.22e-7 8.47e-7 ✓ sig. —
Gastrointestinal neoplasms Medulloblastoma
3 genes
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APC(1), ERBB2(1), HIC1(1)
0.059 0.750 1.21e-7 8.40e-7 ✓ sig. Cluster 41 →
Gorlin syndrome Medulloblastoma
3 genes
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3 of 3 corroborated by 2+ sources
PTCH1(3), SUFU(5), PTCH2(4)
0.059 0.750 1.21e-7 8.40e-7 ✓ sig. —
Gross motor development delay Neuromuscular disease
4 genes
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SCN4A(1), RYR1(1), MYH7(1), TTN(1)
0.073 0.222 1.16e-7 8.09e-7 ✓ sig. —
Hereditary atrial fibrillation Hereditary bundle branch system defect
3 genes
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3 of 3 corroborated by 2+ sources
NKX2-5(2), SCN5A(2), SCN1B(2)
0.103 0.429 1.16e-7 8.07e-7 ✓ sig. Cluster 4 →
Nasal disorder Pharyngeal disorder
4 genes
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NEK6(1), IL7R(1), FBXO33(1), GAS2L2(1)
0.078 0.174 1.16e-7 8.06e-7 ✓ sig. Cluster 137 →
Dermatomyositis Diffuse cutaneous systemic sclerosis
4 genes
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1 of 4 corroborated by 2+ sources
HLA-DPB1(1), STAT4(1), HLA-DPA1(1), TGFBR1(2)
0.078 0.174 1.16e-7 8.06e-7 ✓ sig. Cluster 25 →
Kidney neoplasms Thyroid neoplasms
5 genes
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BRAF(1), MAPK1(1), PTGS2(1), CCND1(1), SLC5A5(1)
0.061 0.125 1.16e-7 8.06e-7 ✓ sig. Cluster 5 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.