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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoimmune hepatitis Narcolepsy
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(4), HLA-DQB1(4), HLA-DPB1(1), PDCD1(2)
0.059 0.132 1.51e-7 1.03e-6 ✓ sig. —
Adenoid cystic carcinoma Cholangiocarcinoma
6 genes
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1 of 6 corroborated by 2+ sources
PTEN(1), TP53(1), ARID1A(1), KMT2C(1), FGFR2(1), BRCA1(2)
0.045 0.158 1.50e-7 1.03e-6 ✓ sig. —
Idiopathic pulmonary fibrosis Thyroid neoplasms
6 genes
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6 of 6 corroborated by 2+ sources
TERT(4), TNF(2), PTGS2(2), HIF1A(2), ABCC10(2), BRD4(2)
0.049 0.130 1.50e-7 1.03e-6 ✓ sig. —
Arima syndrome Cystic kidney disease
3 genes
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CC2D2A(1), CEP290(1), TMEM216(1)
0.097 0.429 1.49e-7 1.02e-6 ✓ sig. Cluster 8 →
Asbestosis Bronchopulmonary dysplasia
4 genes
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3 of 4 corroborated by 2+ sources
GSTT1(2), IL1B(2), TNF(2), GSTM1(1)
0.068 0.235 1.47e-7 1.01e-6 ✓ sig. —
Henoch schoenlein purpura Proteinuria
4 genes
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4 of 4 corroborated by 2+ sources
AGT(2), HLA-DQA1(3), HLA-DRB1(2), IL1RN(2)
0.070 0.222 1.42e-7 9.76e-7 ✓ sig. —
Double outlet right ventricle Heterotaxy syndrome
3 genes
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2 of 3 corroborated by 2+ sources
CFC1(5), CERS1(1), GDF1(2)
0.107 0.375 1.41e-7 9.69e-7 ✓ sig. —
Generalized epilepsy Lennox-gastaut syndrome
4 genes
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3 of 4 corroborated by 2+ sources
CACNA1A(2), CUX2(3), SCN1A(4), POLG(1)
0.054 0.333 1.40e-7 9.58e-7 ✓ sig. —
Autoimmune polyendocrine syndrome Narcolepsy
3 genes
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3 of 3 corroborated by 2+ sources
0.057 0.750 1.37e-7 9.38e-7 ✓ sig. Cluster 1 →
Cataplexy and narcolepsy Narcolepsy
3 genes
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3 of 3 corroborated by 2+ sources
P2RY11(3), PPAN(2), PPAN-P2RY11(2)
0.057 0.750 1.37e-7 9.38e-7 ✓ sig. Cluster 1 →
Optic neuritis Senile cataract
3 genes
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CAT(1), GSTT1(1), GSTM1(1)
0.125 0.231 1.34e-7 9.20e-7 ✓ sig. —
Osteonecrosis of medial femoral condyle Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
F2(2), PLAT(2), F5(2)
0.125 0.250 1.31e-7 9.01e-7 ✓ sig. —
Eye neoplasms Sebaceous gland disease
3 genes
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HERC2(1), IRF4(1), TYR(1)
0.125 0.250 1.31e-7 9.01e-7 ✓ sig. —
Avascular necrosis of bone Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
F2(2), PLAT(2), F5(2)
0.125 0.250 1.31e-7 9.01e-7 ✓ sig. —
Carpal tunnel syndrome Congenital cartilage disorder
5 genes
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5 of 5 corroborated by 2+ sources
COL11A1(2), COL11A2(2), COMP(3), ADAMTSL2(2), COL10A1(2)
0.056 0.167 1.28e-7 8.84e-7 ✓ sig. Cluster 345 →
Blepharocheilodontic syndrome Cleft lip with or without cleft palate
2 genes
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2 of 2 corroborated by 2+ sources
CTNND1(7), CDH1(5)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 312 →
Carotid artery thrombosis Glanzmann thrombasthenia
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(8), ITGA2B(8)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 33 →
Carotid artery thrombosis platelet-type bleeding disorder 16
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(3), ITGA2B(3)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 33 →
Polycystic kidney disease with tuberous sclerosis Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), TSC2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 70 →
Polycystic kidneys, severe infantile with tuberous sclerosis Tuberous sclerosis complex
2 genes
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1 of 2 corroborated by 2+ sources
PKD1(1), TSC2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 70 →
Cerebellar ataxia, intellectual disability, and dysequilibrium Cerebellar ataxia, mental retardation, and dysequilibrium
2 genes
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2 of 2 corroborated by 2+ sources
WDR81(3), CA8(4)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 317 →
Cerebellar ataxia, mental retardation, and dysequilibrium Dysequilibrium syndrome
2 genes
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2 of 2 corroborated by 2+ sources
WDR81(3), CA8(3)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 317 →
Cerebral cavernous malformation Congenital cerebral aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
PDCD10(7), CCM2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 308 →
Cerebral cavernous malformation Congenital malformation of cerebral vessels
2 genes
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2 of 2 corroborated by 2+ sources
PDCD10(7), CCM2(7)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. Cluster 308 →
Cerebrooculofacioskeletal syndrome De sanctis-cacchione syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ERCC6(5), PGBD3(1)
0.286 1.000 1.27e-7 8.71e-7 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.