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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Cholesterol embolism Thromboembolism
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. —
Megaloblastic anemia Transcobalamin deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(7), TCN1(3)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 106 →
Transcobalamin deficiency Vitamin b deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TCN2(7), TCN1(2)
0.154 1.000 5.57e-7 3.41e-6 ✓ sig. Cluster 106 →
Retinal degeneration Stargardt disease
4 genes
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4 of 4 corroborated by 2+ sources
CRX(2), RPE65(2), RHO(2), RDH12(2)
0.065 0.143 5.54e-7 3.41e-6 ✓ sig. Cluster 7 →
Nasopharyngeal carcinoma Papilloma
3 genes
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SOD2(1), ERBB2(1), CCND1(1)
0.094 0.250 5.52e-7 3.40e-6 ✓ sig. —
Febrile convulsion Lennox-gastaut syndrome
3 genes
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2 of 3 corroborated by 2+ sources
GABRG2(5), SCN1A(3), SCN2A(1)
0.094 0.250 5.52e-7 3.40e-6 ✓ sig. Cluster 47 →
B-cell chronic lymphocytic leukemia Lymphocytic b-cell leukemia
3 genes
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3 of 3 corroborated by 2+ sources
TP53(2), ATM(2), P2RX7(2)
0.075 0.375 5.47e-7 3.36e-6 ✓ sig. —
Hematuria Hemorrhage
3 genes
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3 of 3 corroborated by 2+ sources
PLAU(2), POMC(2), F7(2)
0.091 0.273 5.44e-7 3.35e-6 ✓ sig. —
Hematoma Intracranial vasospasm
2 genes
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2 of 2 corroborated by 2+ sources
S100B(2), PLAT(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Hemimegalencephaly overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes
2 genes
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2 of 2 corroborated by 2+ sources
AKT3(3), MTOR(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Hereditary hemorrhagic telangiectasia Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 40 →
Rippling muscle disease Tubular aggregate myopathy
2 genes
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1 of 2 corroborated by 2+ sources
OXTR(1), CAV3(6)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 217 →
Bouillaud’s disease Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Skeletal system disease
2 genes
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0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Wheat allergic reaction
2 genes
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0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Chromosome 3p25 monosomy Tubular aggregate myopathy
2 genes
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2 of 2 corroborated by 2+ sources
OXTR(2), CAV3(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 217 →
Acromesomelic dysplasia Geleophysic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(6), LTBP3(6)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 52 →
Klippel-trenaunay syndrome Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 40 →
Follicular thyroid cancer Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), HRAS(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 18 →
Gallbladder disease Sitosterolemia
2 genes
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2 of 2 corroborated by 2+ sources
ABCG8(7), ABCG5(7)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Ataxia with vitamin e deficiency Hypoalphalipoproteinemia
2 genes
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2 of 2 corroborated by 2+ sources
APOA1(5), APOB(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 140 →
Ferroxidase deficiency Iron overload
2 genes
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2 of 2 corroborated by 2+ sources
CP(3), SLC40A1(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 231 →
Capillary malformation Klippel-trenaunay syndrome
2 genes
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1 of 2 corroborated by 2+ sources
GNAQ(1), PIK3CA(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 40 →
Nausea Orthostatic hypotension
2 genes
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2 of 2 corroborated by 2+ sources
OPRM1(2), ABCB1(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 57 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.