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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Mitochondrial hepatopathy Polyneuropathy
2 genes
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POLG(1), POLGARF(1)
0.077 0.667 6.98e-6 3.53e-5 ✓ sig. —
Cervical intraepithelial neoplasia Gastroparesis
2 genes
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0.125 0.333 6.95e-6 3.52e-5 ✓ sig. Cluster 1 →
Ovarian mucinous adenocarcinoma Testicular hydrocele
2 genes
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INHBB(1), PAX8(1)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. —
Cushing's disease Penile disease
2 genes
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2 of 2 corroborated by 2+ sources
ATRX(2), POMC(2)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. —
Arthrogryposis Digitotalar dysmorphism
2 genes
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1 of 2 corroborated by 2+ sources
MYH3(1), TPM2(2)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. Cluster 202 →
Cardiovascular abnormalities Vascular remodeling
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), AGT(2)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. Cluster 136 →
Infantile spasms Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(7), TSC1(7)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. —
Ductal carcinoma Lobular carcinoma
2 genes
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CDH1(1), STAT5A(1)
0.125 0.333 6.95e-6 3.52e-5 ✓ sig. —
Bronchiectasis Extrinsic allergic alveolitis
2 genes
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1 of 2 corroborated by 2+ sources
TNF(2), TAP1(1)
0.100 0.500 6.87e-6 3.49e-5 ✓ sig. —
Congenital fusion of ribs Micrognathism
2 genes
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0.100 0.500 6.87e-6 3.49e-5 ✓ sig. —
Hodgkin disease Hyper-immunoglobulin m syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CD40LG(2), CD40(2)
0.100 0.500 6.87e-6 3.49e-5 ✓ sig. Cluster 131 →
Heart valve prolapse Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
COL1A1(2), TIMP1(2), COL1A2(2)
0.064 0.150 6.70e-6 3.40e-5 ✓ sig. —
B-cell chronic lymphocytic leukemia Urologic neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), CCND1(2)
0.133 0.250 6.60e-6 3.35e-5 ✓ sig. Cluster 3 →
Accessory skin tag Ruptured abdominal aortic aneurysm
2 genes
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ELN(1), EFEMP2(1)
0.133 0.250 6.60e-6 3.35e-5 ✓ sig. —
Huntington disease Hypotension
5 genes
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5 of 5 corroborated by 2+ sources
GRIN2B(2), MAOA(2), MAOB(2), IL6(2), CNR1(2)
0.040 0.082 6.60e-6 3.35e-5 ✓ sig. —
Congenital hemangioma Uveal melanoma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(2), GNAQ(3)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
Cutis marmorata telangiectatica congenita Uveal melanoma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(3), ARL6IP6(2)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
Nephronophthisis Nephronophthisis-like nephropathy
2 genes
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2 of 2 corroborated by 2+ sources
XPNPEP3(6), SLC41A1(4)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. —
Ataxia, spastic, autosomal dominant Myasthenic syndrome
2 genes
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1 of 2 corroborated by 2+ sources
TAPBPL(1), VAMP1(5)
0.049 1.000 6.58e-6 3.34e-5 ✓ sig. Cluster 34 →
Arachnodactyly Byzanthine arch palate
2 genes
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1 of 2 corroborated by 2+ sources
FBN1(2), NSDHL(1)
0.118 0.400 6.57e-6 3.34e-5 ✓ sig. Cluster 381 →
Bronchopulmonary dysplasia Senile cataract
3 genes
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GSTP1(1), GSTT1(1), GSTM1(1)
0.054 0.231 6.54e-6 3.32e-5 ✓ sig. —
Gastrointestinal disease Hematologic disease
3 genes
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2 of 3 corroborated by 2+ sources
MTHFR(2), JAK2(1), MTR(2)
0.063 0.167 6.51e-6 3.31e-5 ✓ sig. —
Congenital clubfoot Neuropathic spinal arthropathy
2 genes
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COL5A1(1), KAT6B(1)
0.080 0.667 6.40e-6 3.25e-5 ✓ sig. —
Diffuse cutaneous systemic sclerosis MHC class I deficiency
2 genes
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2 of 2 corroborated by 2+ sources
TAP2(2), TAP1(2)
0.080 0.667 6.40e-6 3.25e-5 ✓ sig. —
Osteosarcoma Sarcoma
4 genes
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1 of 4 corroborated by 2+ sources
TP53(3), GSTP1(1), SOX2(1), BCOR(1)
0.046 0.121 6.37e-6 3.24e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.