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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Carbohydrate metabolism disease Prediabetes
2 genes
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HK1(1), GCK(1)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Generalized lipodystrophy Partial lipodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
PPARG(1), CAV1(3)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. Cluster 71 →
Osteonecrosis of the femoral head Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
F2(2), PLAT(2), F5(2)
0.048 0.250 7.82e-6 3.94e-5 ✓ sig. —
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital brain malformation
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital hypoplasia of part of brain
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Demyelinating diseases Osteosarcoma
3 genes
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3 of 3 corroborated by 2+ sources
TP53(3), SIRT1(2), MYC(2)
0.045 0.273 7.77e-6 3.91e-5 ✓ sig. Cluster 3 →
Combined immunodeficiency disease Lymphoproliferative syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CD70(2), ITK(6), CD27(5)
0.054 0.214 7.75e-6 3.90e-5 ✓ sig. —
Anti-glomerular basement membrane disease Giant cell arteritis
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRB1(2), FCGR3A(1)
0.095 0.500 7.73e-6 3.90e-5 ✓ sig. Cluster 1 →
Hematologic disease Neural tube defects, folate-sensitive
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(3), MTR(3)
0.095 0.500 7.73e-6 3.90e-5 ✓ sig. Cluster 121 →
Amnesia Diabetes insipidus
2 genes
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2 of 2 corroborated by 2+ sources
AVP(2), POMC(2)
0.095 0.500 7.73e-6 3.90e-5 ✓ sig. —
autosomal recessive primary microcephaly Seckel syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CENPE(4), CDK5RAP2(2)
0.095 0.500 7.73e-6 3.90e-5 ✓ sig. —
Avascular necrosis of femoral head Spondyloepimetaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(5), TRPV4(5)
0.074 0.667 7.58e-6 3.83e-5 ✓ sig. —
Brachyolmia Spondyloepimetaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
TRPV4(7), PAPSS2(6)
0.074 0.667 7.58e-6 3.83e-5 ✓ sig. —
Congenital nasopharyngeal atresia Situs inversus
3 genes
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DNAH5(1), DNAH11(1), DNAAF19(1)
0.063 0.150 7.44e-6 3.75e-5 ✓ sig. —
Esophageal adenocarcinoma Peptic ulcer disease
5 genes
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BCL3(1), FOXP1(1), BARX1(1), SLC22A3(1), TPPP(1)
0.033 0.143 7.41e-6 3.74e-5 ✓ sig. —
Bipolar depression Non-organic psychosis
6 genes
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ANK3(1), GCH1(1), CACNA1C(1), TENM4(1), TRPM2(1), GRIK4(1)
0.036 0.087 7.37e-6 3.72e-5 ✓ sig. —
Atherosclerosis Erectile dysfunction
6 genes
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5 of 6 corroborated by 2+ sources
CELA2A(3), VEGFA(2), NOS3(2), EDN1(2), EDNRA(3), TDRD15(1)
0.034 0.098 7.37e-6 3.72e-5 ✓ sig. —
Hemangiosarcoma Temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), TEK(2), KDR(2)
0.061 0.167 7.16e-6 3.62e-5 ✓ sig. —
Benign prostatic hyperplasia Toxic nodular goiter
3 genes
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TERT(1), SLK(1), STN1(1)
0.060 0.176 7.16e-6 3.62e-5 ✓ sig. —
Diabetic ketoacidosis Neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
INS(3), INS-IGF2(2), SLC2A2(3)
0.060 0.176 7.16e-6 3.62e-5 ✓ sig. Cluster 36 →
Essential thrombocythemia Myelodysplastic syndrome
3 genes
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3 of 3 corroborated by 2+ sources
TP53(3), TET2(5), JAK2(4)
0.053 0.231 6.99e-6 3.53e-5 ✓ sig. Cluster 53 →
Hemorrhage Warfarin sensitivity
2 genes
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NQO1(1), CYP2C9(1)
0.077 0.667 6.98e-6 3.53e-5 ✓ sig. —
Blood coagulation disorder Combined deficiency of vitamin k-dependent clotting factors
2 genes
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2 of 2 corroborated by 2+ sources
VKORC1(5), GGCX(6)
0.077 0.667 6.98e-6 3.53e-5 ✓ sig. —
Meningioma Schwannomatosis
2 genes
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2 of 2 corroborated by 2+ sources
SMARCB1(4), NF2(5)
0.077 0.667 6.98e-6 3.53e-5 ✓ sig. —
Becker muscular dystrophy Conduction disorder of the heart
2 genes
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1 of 2 corroborated by 2+ sources
DMD(4), PKP2(1)
0.077 0.667 6.98e-6 3.53e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.