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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital arteriovenous malformation Hypophosphatemic rickets
2 genes
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HRAS(1), LRRC56(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. Cluster 18 →
Lipoma Venous insufficiency
2 genes
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SLC19A2(1), F5(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. Cluster 37 →
Coronary thrombosis Von willebrand disorder
2 genes
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1 of 2 corroborated by 2+ sources
PLAT(2), GP6(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. —
Cystine urolithiasis Myasthenic syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PREPL(5), SLC3A1(1)
0.048 0.667 1.97e-5 9.35e-5 ✓ sig. —
Dysarthria Xeroderma pigmentosum-cockayne syndrome
2 genes
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1 of 2 corroborated by 2+ sources
BIVM-ERCC5(1), ERCC5(3)
0.077 0.400 1.94e-5 9.23e-5 ✓ sig. —
Neurodegenerative disorder Splenomegaly
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2)
0.051 0.150 1.94e-5 9.19e-5 ✓ sig. —
Rickets Uremia
2 genes
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2 of 2 corroborated by 2+ sources
VDR(2), PTH(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Cervical disc degenerative disorder Uremia
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), SPARC(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. Cluster 180 →
Developmental regression Focal onset epileptic seizure
2 genes
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SCN8A(1), GNB1(1)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Corneal neovascularization Diabetes microvascular complications
2 genes
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2 of 2 corroborated by 2+ sources
VEGFA(3), IL1RN(3)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Cyclin-dependent kinase-like 5 deficiency Gross motor development delay
2 genes
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CACNA1A(1), MECP2(1)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. Cluster 61 →
Amnesia Gastrointestinal hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
AVP(2), CSF2(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Ankle fracture Bone fracture
2 genes
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CPED1(1), WNT16(1)
0.029 1.000 1.92e-5 9.14e-5 ✓ sig. —
Juvenile arthritis Skin disease
9 genes
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9 of 9 corroborated by 2+ sources
SMAD3(2), IL1RN(2), ALOX12(2), CD83(2), LPP(2), NR4A2(2), TNFAIP6(2), TNIK(2), UBE2E1(2)
0.030 0.069 1.91e-5 9.09e-5 ✓ sig. —
Lymphoid leukemia Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.065 0.500 1.91e-5 9.08e-5 ✓ sig. —
autosomal dominant polycystic kidney disease Intracranial aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), PKD2(2)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. —
Colobomatous microphthalmia Klippel-feil syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GDF6(6), GDF3(6)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. Cluster 56 →
Chiari-frommel syndrome Dyskinesia, drug-induced
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), GAD1(2)
0.095 0.286 1.85e-5 8.83e-5 ✓ sig. —
Diabetic ketoacidosis Maturity-onset diabetes of the young (mody)
3 genes
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3 of 3 corroborated by 2+ sources
INS(6), INS-IGF2(2), PAX4(5)
0.054 0.130 1.85e-5 8.80e-5 ✓ sig. Cluster 36 →
Auricle malformation Byzanthine arch palate
2 genes
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FGFR2(1), EARS2(1)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Congenital nystagmus Oculocutaneous albinism
2 genes
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2 of 2 corroborated by 2+ sources
OCA2(6), TYR(5)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Optic neuritis Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Rheumatic disease Urologic neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
WWOX(2), FHIT(2)
0.100 0.250 1.84e-5 8.75e-5 ✓ sig. —
Glycogen storage disease Left ventricular disease
4 genes
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4 of 4 corroborated by 2+ sources
ACE(2), PRKAG2(3), TNNT2(4), GAA(7)
0.040 0.108 1.83e-5 8.72e-5 ✓ sig. —
Charcot-Marie-Tooth disease type 2 Hereditary motor and sensory neuropathies
2 genes
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2 of 2 corroborated by 2+ sources
RAB7A(2), NEFL(2)
0.030 1.000 1.81e-5 8.63e-5 ✓ sig. Cluster 15 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.