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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arginine-glycine amidinotransferase deficiency Fanconi renotubular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATM(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
arterial calcification, generalized, of infancy, 1 Crystal arthropathy
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 128 →
Arteriovenous hemangioma Bockenheimer syndrome
1 gene
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TEK(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 261 →
Arteriovenous hemangioma Mucocutaneous venous malformations
1 gene
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1 of 1 corroborated by 2+ sources
TEK(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 261 →
Arteritis Central retinal vein occlusion
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 314 →
Arteritis hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 314 →
Arthrogryposis with oculomotor limitation and retinal anomalies Gorlin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 203 →
Asymmetric septal hypertrophy Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy Biventricular noncompaction cardiomyopathy
1 gene
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MYH7(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Asymmetric septal hypertrophy dilated cardiomyopathy 1S
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 89 →
Ataxia with polyneuropathy Mitochondrial myopathy with sideroblastic anemia
1 gene
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ATP6(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 90 →
Atrial and intestinal dysrhythmia Chronobiology disorder
1 gene
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1 of 1 corroborated by 2+ sources
SGO1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 191 →
Atypical multiple mole melanoma syndrome Brain stem neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 384 →
Auriculocondylar syndrome Urinary retention
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 74 →
Autoinflammation, antibody deficiency, and immune dysregulation Cryopyrin-associated periodic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 192 →
autosomal dominant slowed nerve conduction velocity Genetic peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
autosomal dominant slowed nerve conduction velocity Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Avoidant restrictive food intake disorder Bile duct calculus
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 177 →
Basal cell nevus syndrome Culler-jones syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 212 →
Basal cell nevus syndrome Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 212 →
BBS9-related ciliopathy Post-operative stroke
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Benign fasciculation-cramp syndrome Genetic peripheral neuropathy
1 gene
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TRPA1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Benign fasciculation-cramp syndrome Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Benign neonatal epilepsy fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.