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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cystinuria Myasthenic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PREPL(5), SLC3A1(7)
0.047 0.500 3.94e-5 1.80e-4 ✓ sig. —
Diffuse cutaneous systemic sclerosis Pulmonary arterial hypertension
3 genes
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1 of 3 corroborated by 2+ sources
CAV1(4), HLA-DPB1(1), HLA-DPA1(1)
0.045 0.130 3.97e-5 1.81e-4 ✓ sig. —
Eye disorder Gouty arthritis
2 genes
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1 of 2 corroborated by 2+ sources
IL1B(1), POMC(2)
0.083 0.200 3.97e-5 1.81e-4 ✓ sig. —
Gouty arthritis Intervertebral disc disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
IL1B(2), TGFB1(2)
0.083 0.200 3.97e-5 1.81e-4 ✓ sig. Cluster 180 →
Brain edema Secondary parkinson disease
2 genes
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2 of 2 corroborated by 2+ sources
NOS2(2), SLC18A2(6)
0.083 0.200 3.97e-5 1.81e-4 ✓ sig. —
Neuropathy Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.077 0.250 4.02e-5 1.84e-4 ✓ sig. Cluster 146 →
Severe congenital neutropenia Shwachman-diamond syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SRP19(2), SRP54(5)
0.071 0.286 4.07e-5 1.86e-4 ✓ sig. —
Dextrocardia Heterotaxy syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ZIC3(5), CFAP53(4)
0.071 0.286 4.07e-5 1.86e-4 ✓ sig. Cluster 46 →
Iron metabolism disorder Iron overload
2 genes
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2 of 2 corroborated by 2+ sources
CP(3), FTH1(2)
0.071 0.286 4.07e-5 1.86e-4 ✓ sig. —
Carbohydrate deficient glycoprotein syndrome Congenital disorder of glycosylation
2 genes
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2 of 2 corroborated by 2+ sources
MAN1B1(3), TMEM165(4)
0.020 1.000 4.09e-5 1.87e-4 ✓ sig. —
Creutzfeldt-jakob disease Erythropoietic protoporphyria
2 genes
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2 of 2 corroborated by 2+ sources
AREG(3), EREG(3)
0.065 0.333 4.10e-5 1.87e-4 ✓ sig. Cluster 158 →
Hodgkin disease Optic neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
CSF3(2), IFNA2(1)
0.080 0.222 4.11e-5 1.88e-4 ✓ sig. —
Atrioventricular block Cardiac conduction disease
2 genes
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2 of 2 corroborated by 2+ sources
TRPM4(2), LMNA(3)
0.080 0.222 4.11e-5 1.88e-4 ✓ sig. Cluster 4 →
Intracerebral hemorrhage Small vessel stroke
3 genes
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1 of 3 corroborated by 2+ sources
COL4A2(2), PMF1(1), PMF1-BGLAP(1)
0.043 0.143 4.11e-5 1.88e-4 ✓ sig. —
Auditory system disease Vascular brain injury
2 genes
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BMAL1(1), RASSF10(1)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. Cluster 94 →
Autoimmune lymphoproliferative disorder Lymphoproliferative syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FAS(6), ITK(5)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Testicular disease Testicular hydrocele
2 genes
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INHBB(1), PAX8(1)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Cardiovascular abnormalities Cartilage disease
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), EDN1(2)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Copper overload cirrhosis Nephrosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), ACTA2(2)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Cerebral palsy Restrictive cardiomyopathy
3 genes
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CACNA1C(1), SYNE2(1), TTN(1)
0.045 0.130 4.24e-5 1.93e-4 ✓ sig. —
Carpal tunnel syndrome Prion disease
3 genes
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ZBTB38(1), SEMA3A(1), ADAMTS14(1)
0.038 0.176 4.26e-5 1.94e-4 ✓ sig. —
Coronary thrombosis Platelet disorder
2 genes
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1 of 2 corroborated by 2+ sources
ITGB3(2), GP6(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Coronary thrombosis Intracranial hemorrhage
2 genes
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1 of 2 corroborated by 2+ sources
SCAPER(1), PLAT(2)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Occupational disease Papilloma
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), NQO1(2)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Costello syndrome Hypophosphatemic rickets
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(6), LRRC56(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.