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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Clonal hematopoiesis Idiopathic pulmonary fibrosis
5 genes
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3 of 5 corroborated by 2+ sources
RTEL1(4), TERT(4), ZNF318(1), ABCC10(1), STN1(4)
0.037 0.089 1.17e-5 5.72e-5 ✓ sig. —
Hepatitis c induced liver cirrhosis Membranous glomerulonephritis
2 genes
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BTNL2(1), TSBP1(1)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. Cluster 1 →
1p36.33 duplication syndrome Pontocerebellar hypoplasia
2 genes
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2 of 2 corroborated by 2+ sources
ATAD3A(5), ATAD3C(3)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Malnutrition Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), CBS(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Caudal regression syndrome Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
FUZ(2), VANGL1(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Auditory neuropathy Riboflavin transporter deficiency
2 genes
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2 of 2 corroborated by 2+ sources
SLC52A3(2), SLC52A2(2)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Auditory neuropathy Spastic paraplegia, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
PLP1(3), RAB9B(1)
0.061 0.667 1.18e-5 5.75e-5 ✓ sig. —
Corneal astigmatism Glaucoma
8 genes
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1 of 8 corroborated by 2+ sources
BNC2(1), HERC2(1), VAV2(1), ADAMTS8(1), ANGPT1(3), FMNL2(1), LMO7(1), BICC1(1)
0.027 0.113 1.18e-5 5.76e-5 ✓ sig. Cluster 240 →
Gastrointestinal disease Polycythemia, primary familial and congenital
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Familial polycythemia Gastrointestinal disease
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Gastrointestinal disease Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), JAK2(2)
0.059 0.667 1.25e-5 6.12e-5 ✓ sig. —
Gross motor development delay Sotos syndrome
2 genes
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1 of 2 corroborated by 2+ sources
SCN4A(1), NSD1(8)
0.091 0.400 1.29e-5 6.29e-5 ✓ sig. —
Gross motor development delay Hemiplegic migraine
2 genes
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1 of 2 corroborated by 2+ sources
CACNA1A(2), WDR45(1)
0.091 0.400 1.29e-5 6.29e-5 ✓ sig. —
Amnesia Degenerative disorder
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), IL6(2), NGF(2)
0.054 0.167 1.29e-5 6.30e-5 ✓ sig. —
Retinitis pigmentosa-deafness syndrome Vitreoretinal degeneration
2 genes
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CDH23(1), C10orf105(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Diffuse idiopathic skeletal hyperostosis Facial nerve disorder
2 genes
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CDC5L(1), SUPT3H(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Auricle malformation Testicular hydrocele
2 genes
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DIPK1A(1), RPL5(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 236 →
B-cell chronic lymphocytic leukemia Melanocytic nevus
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), ATM(2)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Metachromatic leukodystrophy Retinitis pigmentosa-deafness syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(5), CDH23(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 118 →
Hereditary hemolytic anemia Secondary polycythemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), BPGM(2)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. Cluster 105 →
Hypertrichosis Rubinstein-taybi syndrome
2 genes
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1 of 2 corroborated by 2+ sources
CREBBP(7), ASXL1(1)
0.111 0.250 1.30e-5 6.32e-5 ✓ sig. —
Diverticulitis Obstructive sleep apnea syndrome
4 genes
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JCAD(1), NBEA(1), SLC35F3(1), LHX8(1)
0.038 0.143 1.32e-5 6.44e-5 ✓ sig. —
Cervical disc degenerative disorder Gouty arthritis
2 genes
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IL1B(1), TGFB1(1)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. Cluster 180 →
Cleft lip and palate Cleft lip with or without cleft palate
2 genes
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1 of 2 corroborated by 2+ sources
CDH1(1), ARHGAP29(2)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. —
Eyelid disease Uterine prolapse
2 genes
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EFEMP1(1), PNPT1(1)
0.100 0.333 1.33e-5 6.45e-5 ✓ sig. Cluster 146 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.