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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Intervertebral disc disease Intervertebral disc displacement
2 genes
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2 of 2 corroborated by 2+ sources
COL11A1(3), THBS2(3)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Delirium Disruptive impulse-control and conduct disorder
2 genes
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2 of 2 corroborated by 2+ sources
DRD2(2), DRD3(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Beckwith-wiedemann syndrome Sotos syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NSD1(8), PIK3CA(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Beckwith-wiedemann syndrome Weaver syndrome
2 genes
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1 of 2 corroborated by 2+ sources
NSD1(4), PIK3CA(1)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency Pleural diseases
2 genes
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2 of 2 corroborated by 2+ sources
IL6(2), IFNG(2)
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Bilateral microphthalmos Martsolf syndrome
2 genes
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1 of 2 corroborated by 2+ sources
0.143 0.400 3.79e-6 2.01e-5 ✓ sig. —
Myelomonocytic leukemia Promyelocytic leukemia
3 genes
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3 of 3 corroborated by 2+ sources
NRAS(2), PTPN11(4), ASXL1(2)
0.052 0.300 3.80e-6 2.01e-5 ✓ sig. —
Diabetic ketoacidosis Permanent neonatal diabetes mellitus
3 genes
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3 of 3 corroborated by 2+ sources
INS(7), INS-IGF2(2), SLC2A2(3)
0.064 0.214 3.85e-6 2.04e-5 ✓ sig. Cluster 36 →
Non-syndromic cataract Nuclear cataract
2 genes
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2 of 2 corroborated by 2+ sources
EPHA2(3), CRYBB3(3)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. Cluster 43 →
Hematologic disease Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), JAK2(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Hematologic disease Malnutrition
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTR(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. Cluster 121 →
Avascular necrosis of femoral head Spondyloepiphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(8), TRPV4(6)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Bulbar palsy Gross motor development delay
2 genes
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CACNA1A(1), MECP2(1)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. Cluster 61 →
Gross motor development delay Multiminicore myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH7(2), TTN(2)
0.100 0.667 3.87e-6 2.04e-5 ✓ sig. —
Osteonecrosis of the femoral head Thrombophilia
4 genes
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3 of 4 corroborated by 2+ sources
F2(6), PLAT(3), F5(6), TFPI(1)
0.049 0.125 3.88e-6 2.05e-5 ✓ sig. —
Ischemic stroke Vascular dementia
6 genes
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3 of 6 corroborated by 2+ sources
APOE(2), TOMM40(2), MTHFR(1), PON2(1), TNF(1), PRKCH(2)
0.034 0.118 3.89e-6 2.05e-5 ✓ sig. —
adult neuronal ceroid lipofuscinosis Neuronal ceroid lipofuscinosis
2 genes
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2 of 2 corroborated by 2+ sources
CTSF(8), DNAJC5(6)
0.063 1.000 3.92e-6 2.07e-5 ✓ sig. Cluster 51 →
Auditory neuropathy Brown-vialetto-van laere syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SLC52A3(6), SLC52A2(6)
0.063 1.000 3.92e-6 2.07e-5 ✓ sig. —
Extrinsic allergic alveolitis Hyperbilirubinemia
2 genes
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1 of 2 corroborated by 2+ sources
SOD2(1), TNF(2)
0.125 0.500 3.94e-6 2.08e-5 ✓ sig. —
Homocystinuria with megaloblastic anemia Hyperhomocysteinemia
2 genes
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2 of 2 corroborated by 2+ sources
MTRR(3), MTR(2)
0.125 0.500 3.94e-6 2.08e-5 ✓ sig. Cluster 121 →
Arteritis Occupational disease
2 genes
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2 of 2 corroborated by 2+ sources
PON1(2), CYP1A1(2)
0.125 0.500 3.94e-6 2.08e-5 ✓ sig. —
Senile cataract Ureteral calculi
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), GSTP1(2)
0.125 0.500 3.94e-6 2.08e-5 ✓ sig. —
Congenital pain insensitivity Sensory neuropathy
2 genes
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NGF(1), SCN11A(1)
0.125 0.500 3.94e-6 2.08e-5 ✓ sig. —
Diffuse large b-cell lymphoma Follicular lymphoma
3 genes
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1 of 3 corroborated by 2+ sources
BCL2(2), NCOA5(1), EXOC6(1)
0.047 0.333 3.98e-6 2.10e-5 ✓ sig. Cluster 1 →
Hereditary breast and ovarian cancer syndrome Sarcoma
3 genes
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3 of 3 corroborated by 2+ sources
TP53(3), ATM(2), BRCA2(4)
0.065 0.200 4.01e-6 2.11e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.