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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Imerslund-grasbeck syndrome Vitamin b deficiency
2 genes
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2 of 2 corroborated by 2+ sources
CUBN(6), AMN(5)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 106 →
Desmoid tumor Intestinal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(3), APC(6)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —
Bouillaud’s disease Latent autoimmune diabetes in adults
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Bouillaud’s disease
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Skeletal system disease
2 genes
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0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Autoimmune musculoskeletal system disorder Wheat allergic reaction
2 genes
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0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 1 →
Bietti crystalline corneoretinal dystrophy Hereditary corneal dystrophy
2 genes
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1 of 2 corroborated by 2+ sources
CYP4V2(6), KLKB1(1)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. —
Hyperoxaluria Pfaundler-hurler syndrome
2 genes
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1 of 2 corroborated by 2+ sources
IDUA(1), SLC26A1(2)
0.143 0.667 1.67e-6 9.43e-6 ✓ sig. Cluster 296 →
inherited retinal dystrophy Night blindness, congenital stationary
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(4), GNAT1(4), SLC24A1(4)
0.079 0.200 1.70e-6 9.59e-6 ✓ sig. Cluster 151 →
Hemochromatosis Hepatolenticular degeneration
3 genes
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3 of 3 corroborated by 2+ sources
CP(2), TNF(2), HAMP(6)
0.077 0.214 1.73e-6 9.76e-6 ✓ sig. —
Diffuse large b-cell lymphoma Necrosis
5 genes
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CAT(1), BCL2(1), FAS(1), SOD2(1), SOD3(1)
0.046 0.091 1.76e-6 9.91e-6 ✓ sig. —
Cushing syndrome Sick sinus syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CACNA1D(2), POMC(2), KCNJ5(2)
0.081 0.167 1.76e-6 9.94e-6 ✓ sig. —
Congenital stenosis of aortic valve Varicose veins
2 genes
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ELN(1), MMP1(1)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. —
Constipation Nausea
2 genes
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POMC(1), OPRM1(1)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. —
Hereditary bundle branch system defect Paroxysmal familial ventricular fibrillation
2 genes
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1 of 2 corroborated by 2+ sources
DSP(1), SCN5A(2)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. Cluster 4 →
Tubular aggregate myopathy Vacuolar myopathy
2 genes
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2 of 2 corroborated by 2+ sources
STIM1(4), CASQ1(3)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. Cluster 217 →
Chiari-frommel syndrome Disruptive impulse-control and conduct disorder
2 genes
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1 of 2 corroborated by 2+ sources
PRL(1), DRD2(2)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. Cluster 325 →
Christ-siemens-touraine syndrome Hypohidrotic ectodermal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
EDAR(3), EDARADD(3)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. Cluster 117 →
Glucose-6-phosphate dehydrogenase deficiency Hyper-igm immunodeficiency syndrome
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(3), IKBKG(1)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. —
46,xx sex reversal 46,xy sex reversal
2 genes
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2 of 2 corroborated by 2+ sources
NR5A1(2), SRY(2)
0.182 0.400 1.77e-6 9.96e-6 ✓ sig. Cluster 38 →
Cushing syndrome Glucocorticoid-remediable aldosteronism
2 genes
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2 of 2 corroborated by 2+ sources
CYP11B2(2), CYP11B1(4)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. —
Brachydactyly Hemimelia of limb
2 genes
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2 of 2 corroborated by 2+ sources
NOG(5), HOXD13(6)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. —
Congenital cardiomyopathy Postaxial polydactyly
2 genes
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ND5(1), ND4(1)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. Cluster 32 →
Cerebral small vessel disease Intracerebral hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(2)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. Cluster 198 →
Intracerebral hemorrhage Vascular leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
COL4A2(3), COL4A1(3)
0.091 1.000 1.77e-6 9.96e-6 ✓ sig. Cluster 198 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.