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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cadasil Vascular dementia
4 genes
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2 of 4 corroborated by 2+ sources
TREX1(1), NOTCH3(2), ATRIP(1), HTRA1(2)
0.031 0.667 6.75e-8 4.88e-7 ✓ sig. —
Brachydactyly Congenital cartilage disorder
4 genes
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1 of 4 corroborated by 2+ sources
SLC26A2(1), BMPR1B(7), TRPS1(1), PTH1R(1)
0.083 0.190 6.85e-8 4.95e-7 ✓ sig. —
Anodontia Tooth agenesis
3 genes
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3 of 3 corroborated by 2+ sources
LTBP3(2), IRX5(2), MSX1(6)
0.070 0.750 7.00e-8 5.06e-7 ✓ sig. —
Arteriosclerosis Primary graft dysfunction
3 genes
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3 of 3 corroborated by 2+ sources
GATA2(2), VCAM1(2), SENP1(2)
0.070 0.750 7.00e-8 5.06e-7 ✓ sig. —
Dyslexia Hyperlipidemia
10 genes
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7 of 10 corroborated by 2+ sources
APOB(3), APOE(3), BCL3(3), PMFBP1(1), CETP(2), CSGALNACT1(1), DNAH11(3), INTS10(1), ANGPTL4(3), KLF14(3)
0.041 0.090 7.05e-8 5.10e-7 ✓ sig. —
Angina pectoris Carotid artery disease
4 genes
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3 of 4 corroborated by 2+ sources
PLAU(2), TLR4(2), MMP1(1), MMP9(2)
0.063 0.333 7.06e-8 5.10e-7 ✓ sig. —
Diabetic cardiomyopathy Vascular system injury
3 genes
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3 of 3 corroborated by 2+ sources
SPP1(2), TNF(2), AGTR2(2)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Intervertebral disc disease Stickler syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL11A1(6), COL9A2(7), COL9A3(8)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Hemochromatosis Iron deficiency anemia
3 genes
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3 of 3 corroborated by 2+ sources
HFE(6), TNF(2), SLC11A2(2)
0.136 0.300 7.15e-8 5.16e-7 ✓ sig. —
Hemangiosarcoma Urologic neoplasms
3 genes
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TP53(1), VEGFA(1), CCND1(1)
0.125 0.375 7.48e-8 5.40e-7 ✓ sig. Cluster 3 →
Hearing loss with stapes fixation Keratitis-ichthyosis-deafness syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GJB6(2), GJB2(3)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 210 →
Hemoglobin barts fetalis syndrome Hemoglobin m disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 72 →
Hemoglobin h disease Hemoglobin m disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(5), HBA2(5)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 72 →
Hepatic methionine adenosyltransferase deficiency Sulfur amino acid metabolism disorder
2 genes
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AHCY(1), GNMT(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 83 →
Blepharophimosis syndrome Blepharophimosis-intellectual disability syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KAT6B(3), MED12(5)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 200 →
Bouillaud’s disease Skeletal system disease
2 genes
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2 of 2 corroborated by 2+ sources
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Bouillaud’s disease Wheat allergic reaction
2 genes
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2 of 2 corroborated by 2+ sources
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Capillary malformation Congenital lipomatous overgrowth, vascular malformations, and epidermal nevi
2 genes
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1 of 2 corroborated by 2+ sources
GNA11(1), PIK3CA(3)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 40 →
Carnevale syndrome Malpuech facial clefting syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 353 →
Atypical hemolytic uremic syndrome Thrombotic microangiopathy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(2), CFH(2)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 107 →
Benign mucous membrane pemphigoid Bouillaud’s disease
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid with ocular involvement Bouillaud’s disease
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
S-adenosylhomocysteine hydrolase deficiency Sulfur amino acid metabolism disorder
2 genes
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1 of 2 corroborated by 2+ sources
AHCY(2), GNMT(1)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 83 →
Skeletal system disease Wheat allergic reaction
2 genes
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0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 1 →
Keratitis-ichthyosis-deafness syndrome X-linked hearing loss with perilymphatic gusher
2 genes
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2 of 2 corroborated by 2+ sources
GJB6(2), GJB2(4)
0.400 0.667 7.59e-8 5.41e-7 ✓ sig. Cluster 210 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.