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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ovarian cancer Squamous cell carcinoma
226 genes
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15 of 226 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), GLI3(1), SH2B3(1), CHEK2(2), RTEL1(1), TERT(1), TP53(2), TPCN2(1) +214 more
0.219 0.485 2.16e-172 5.12e-170 ✓ sig. Cluster 20 →
Cervical cancer Esophageal cancer
109 genes
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1 of 109 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +97 more
0.395 0.694 3.37e-173 8.07e-171 ✓ sig. Cluster 67 →
Isolated sensorineural deafness nonsyndromic genetic hearing loss
78 genes
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78 of 78 corroborated by 2+ sources
CEACAM16(2), ESRRB(2), EYA4(2), GIPC3(2), GRAP(2), MYO15A(2), NARS2(2), OTOF(2), OTOGL(2), PCDH15(2), MCM2(2), OTOG(2) +66 more
0.629 0.951 8.37e-174 2.03e-171 ✓ sig. Cluster 26 →
Cholecystolithiasis Gallstones
92 genes
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5 of 92 corroborated by 2+ sources
HNF1B(1), JMJD1C(1), GATA4(1), ADAR(1), SERPINA1(1), ABCG8(3), ANO1(1), APOE(1), CPS1(1), FADS1(1), FADS2(1), FARP2(1) +80 more
0.526 0.742 2.74e-175 6.70e-173 ✓ sig. Cluster 237 →
Obsessive-compulsive disorder Tourette syndrome
128 genes
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1 of 128 corroborated by 2+ sources
SOX5(2), RERE(1), ATP2A2(1), AKAP6(1), BANK1(1), BRAF(1), C8orf90(1), CACNB2(1), CAMTA1(1), CSMD1(1), CTNND1(1), CYLC2(1) +116 more
0.351 0.547 3.14e-176 7.78e-174 ✓ sig. Cluster 69 →
Skin cancer Skin neoplasms
82 genes
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3 of 82 corroborated by 2+ sources
TERT(1), TP53(2), TPCN2(1), ATP8B4(1), BNC2(1), CTNNA2(1), CUX1(1), EMSY(1), FADS1(1), FADS2(1), FAM76B(1), FOXP1(1) +70 more
0.558 0.988 1.77e-177 4.43e-175 ✓ sig. Cluster 29 →
Non-hodgkins lymphoma Pancreatic cancer
108 genes
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3 of 108 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(4), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.388 0.800 1.44e-177 3.66e-175 ✓ sig. Cluster 67 →
Estrogen-receptor negative breast cancer Non-hodgkins lymphoma
113 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +101 more
0.354 0.837 2.60e-180 6.68e-178 ✓ sig. —
Anorexia nervosa Obsessive-compulsive disorder
129 genes
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1 of 129 corroborated by 2+ sources
SOX5(1), RERE(1), ATP2A2(1), ABT1(1), AKAP6(2), BANK1(1), BRAF(1), C8orf90(1), CACNB2(1), CSMD1(1), CTNND1(1), DCC(1) +117 more
0.361 0.551 1.68e-180 4.38e-178 ✓ sig. Cluster 69 →
Lung cancer Ovarian cancer
217 genes
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5 of 217 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), PDE4D(1), SH2B3(1), CHEK2(2), RTEL1(1), TERT(1), TP53(1), ADARB2(1) +205 more
0.241 0.466 4.86e-181 1.28e-178 ✓ sig. Cluster 20 →
Biliary tract cancer Estrogen-receptor negative breast cancer
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.352 0.915 1.02e-181 2.72e-179 ✓ sig. —
Ovarian cancer Ovarian epithelial cancer
115 genes
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HNF1B(1), GLI3(1), TERT(1), AMPD1(1), POU2AF1(1), ADARB2(1), BCL11A(1), BNC2(1), CARD11(1), CDCP1(1), CTNND1(1), DMD(1) +103 more
0.246 1.000 6.45e-182 1.74e-179 ✓ sig. Cluster 20 →
Deafness Hearing loss
132 genes
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124 of 132 corroborated by 2+ sources
EDNRB(1), CACNA1D(2), CEACAM16(5), CLIC5(3), COL11A1(4), ESRRB(4), EYA4(4), GIPC3(4), GRAP(5), LMX1A(5), MYO15A(4), NARS2(5) +120 more
0.308 0.767 1.31e-183 3.59e-181 ✓ sig. Cluster 26 →
Depression Major depressive disorder
245 genes
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66 of 245 corroborated by 2+ sources
APRT(1), COMT(1), SEC24C(1), SOX9(1), APP(1), CAT(3), TERT(1), GFAP(1), ACE(1), ADRA1A(1), ARSA(1), ATP7B(1) +233 more
0.123 0.878 4.04e-184 1.12e-181 ✓ sig. Cluster 2 →
Colorectal cancer Estrogen-receptor negative breast cancer
208 genes
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4 of 208 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(3), ARHGEF10L(1), ASIP(1), BAD(1) +196 more
0.195 0.703 1.09e-184 3.07e-182 ✓ sig. Cluster 20 →
Non-hodgkins lymphoma Ovarian serous carcinoma
113 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +101 more
0.386 0.837 4.81e-186 1.37e-183 ✓ sig. —
Biliary tract cancer Ovarian serous carcinoma
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.384 0.915 3.93e-187 1.13e-184 ✓ sig. —
Cancer Non-hodgkins lymphoma
113 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +101 more
0.398 0.837 3.36e-188 9.84e-186 ✓ sig. —
Colorectal cancer Ovarian serous carcinoma
202 genes
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3 of 202 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(3), ARHGEF10L(1), ASIP(1), BAD(1) +190 more
0.193 0.748 1.71e-188 5.07e-186 ✓ sig. Cluster 20 →
Endometrial cancer Esophageal cancer
108 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.482 0.688 1.15e-188 3.47e-186 ✓ sig. Cluster 67 →
Gastric cancer Non-hodgkins lymphoma
109 genes
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1 of 109 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +97 more
0.445 0.807 6.82e-189 2.09e-186 ✓ sig. Cluster 67 →
Breast cancer Ovarian serous carcinoma
208 genes
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5 of 208 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), KANSL1(1), RREB1(1), MAP3K1(2), PDE4D(1), SH2B3(1), RTEL1(1), TERT(1), TP53(4), ARHGEF10L(1), ASIP(1) +196 more
0.184 0.770 1.90e-190 5.90e-188 ✓ sig. Cluster 20 →
Estrogen-receptor negative breast cancer Prostate cancer
211 genes
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15 of 211 corroborated by 2+ sources
ANKRD11(1), HNF1B(2), KANSL1(1), RREB1(1), MAP3K1(1), SH2B3(1), RTEL1(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1) +199 more
0.202 0.713 3.26e-191 1.03e-188 ✓ sig. Cluster 20 →
Cervical cancer Non-hodgkins lymphoma
111 genes
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ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(1), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +99 more
0.440 0.822 9.03e-192 2.89e-189 ✓ sig. Cluster 67 →
Biliary tract cancer Pancreatic cancer
108 genes
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3 of 108 corroborated by 2+ sources
ANKRD11(1), HNF1B(1), MAP3K1(1), SH2B3(1), TERT(1), TP53(4), ARHGEF10L(1), ASIP(1), BAD(1), BNC2(1), CELF2(1), DCAF4(1) +96 more
0.414 0.915 8.81e-192 2.86e-189 ✓ sig. Cluster 67 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.