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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Membranous glomerulonephritis Pemphigus
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), C3(2)
0.081 0.375 4.11e-7 2.58e-6 ✓ sig. Cluster 1 →
Auditory neuropathy Congenital ear anomaly
4 genes
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OTOF(1), AIFM1(1), MYO7A(1), RAB33A(1)
0.068 0.129 4.07e-7 2.56e-6 ✓ sig. Cluster 26 →
Brain disease Delirium, dementia, and cognitive disorders
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), CDK5R1(2), SLC1A1(2), TSC1(2), OTC(2)
0.053 0.119 4.07e-7 2.56e-6 ✓ sig. Cluster 351 →
Sezary syndrome Small cell carcinoma
3 genes
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TP53(1), SMARCA4(1), RB1(1)
0.088 0.333 4.01e-7 2.52e-6 ✓ sig. Cluster 3 →
primary ciliary dyskinesia Teratozoospermia
3 genes
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3 of 3 corroborated by 2+ sources
DNAH10(2), CFAP43(2), DNAH1(2)
0.088 0.333 4.01e-7 2.52e-6 ✓ sig. —
Conotruncal cardiac defect Tetralogy of fallot
7 genes
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7 of 7 corroborated by 2+ sources
TBX1(6), ZFPM2(7), NKX2-6(6), NKX2-5(7), GATA6(6), GDF1(3), FOXH1(2)
0.041 0.111 3.98e-7 2.50e-6 ✓ sig. Cluster 111 →
Hyperuricemia Urolithiasis
6 genes
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1 of 6 corroborated by 2+ sources
VEGFA(1), WDR72(1), GCKR(1), ABCG2(5), BCAS1(1), HCRTR2(1)
0.047 0.094 3.96e-7 2.49e-6 ✓ sig. Cluster 178 →
Hyperopia Myopia
8 genes
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8 of 8 corroborated by 2+ sources
IRX5(3), CHD7(2), KCNQ5(3), PRSS56(3), LAMA2(3), RASGRF1(3), GJD2(3), RDH5(3)
0.039 0.101 3.91e-7 2.46e-6 ✓ sig. —
Non-small cell lung carcinoma Small cell lung carcinoma
8 genes
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2 of 8 corroborated by 2+ sources
ALDH1A2(1), EGFR(3), GRIK3(2), HLA-DQA1(1), HLA-DRB1(1), CHRNA5(1), BRCA2(1), BAG6(1)
0.040 0.088 3.84e-7 2.42e-6 ✓ sig. —
Amnesia Pruritus
3 genes
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3 of 3 corroborated by 2+ sources
GRP(2), PDYN(2), TAC1(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. —
Anorexia Congestive ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. Cluster 147 →
Anorexia Myopathic ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.103 0.231 3.81e-7 2.40e-6 ✓ sig. Cluster 147 →
Bouillaud’s disease Cervical intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Bouillaud’s disease Cold paroxysmal hemoglobinuria
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Congenital hyperinsulinism Dend syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ABCC8(3), KCNJ11(5)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Congenital insensitivity to pain Episodic pain syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCN10A(5), SCN11A(4)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 164 →
Bruxism Cyclin-dependent kinase-like 5 deficiency
2 genes
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CDKL5(1), MECP2(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 61 →
Bulbar palsy Cyclin-dependent kinase-like 5 deficiency
2 genes
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CACNA1A(1), MECP2(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 61 →
Cadasil Retinal vasculopathy with cerebral leukodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
TREX1(3), ATRIP(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 150 →
Cadasil Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
NOTCH3(7), HTRA1(6)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Bouillaud’s disease Diabetic nephropathy type 1
2 genes
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2 of 2 corroborated by 2+ sources
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Bouillaud’s disease Hemoglobinuria paroxysmal
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Hypocalcemia Hypocalciuric hypercalcemia
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(7), CASR(7)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Hypocalcemic vitamin d-dependent rickets Rickets
2 genes
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2 of 2 corroborated by 2+ sources
VDR(3), CYP27B1(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 396 →
Benign adult familial myoclonic epilepsy Benign myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 357 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.