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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Nonmedullary thyroid cancer Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), HRAS(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 18 →
Bouillaud’s disease Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Skeletal system disease Vogt-koyanagi-harada disease
2 genes
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1 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Vogt-koyanagi-harada disease Wheat allergic reaction
2 genes
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1 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Diencephalic mesencephalic junction dysplasia Exudative retinopathy
2 genes
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1 of 2 corroborated by 2+ sources
PCDH12(5), RNF14(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 288 →
Distal muscular dystrophy Multiminicore myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH7(2), TTN(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Epidermal nevus Seminoma
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(3), HRAS(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 18 →
Brain neoplasms Rhabdomyosarcoma
4 genes
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1 of 4 corroborated by 2+ sources
VEGFA(1), YAP1(1), PTCH1(1), HRAS(2)
0.065 0.148 5.31e-7 3.27e-6 ✓ sig. —
Aortic stenosis Heart valve disease
5 genes
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FADS1(1), FADS2(1), MECOM(1), CELSR2(1), LPA(1)
0.052 0.122 5.10e-7 3.16e-6 ✓ sig. —
Dysfibrinogenemia Hyper-immunoglobulin m syndrome
2 genes
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CD40LG(1), UNG(1)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Congenital short qt syndrome Paroxysmal atrial fibrillation
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ1(2), CACNA2D1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Craniofacial ulnar renal syndrome Oculopalatosekeletal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 353 →
Cyanosis Delta-beta thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(4), HBG2(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 19 →
Delta-beta thalassemia Hemoglobin e disease
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), HBD(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 19 →
Delta-beta thalassemia Thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), HBD(3)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Cleft eyelid Commissural facial cleft
2 genes
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2 of 2 corroborated by 2+ sources
PAX6(2), SALL2(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Paroxysmal dyskinesia Paroxysmal nonkinesigenic dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(3), KCNA1(2)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 58 →
Bestrophinopathy Vitelliform macular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
BEST1(7), PRPH2(3)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Intestinal pseudo-obstruction Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH11(4), ACTG2(6)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 220 →
Henoch schoenlein purpura Pancreatitis
4 genes
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2 of 4 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), CCL2(1), IL1RN(1)
0.056 0.222 4.97e-7 3.09e-6 ✓ sig. —
Hemangiosarcoma Osteosarcoma
4 genes
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1 of 4 corroborated by 2+ sources
TP53(2), VEGFA(1), JUN(1), MYC(1)
0.056 0.222 4.97e-7 3.09e-6 ✓ sig. Cluster 3 →
Retinal detachment Retinitis punctata albescens
3 genes
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2 of 3 corroborated by 2+ sources
EYS(1), RDH5(3), RHO(2)
0.060 0.500 4.96e-7 3.09e-6 ✓ sig. —
Lymphoma Myelodysplastic syndrome
5 genes
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CDKN2B(1), IRF4(1), KRAS(1), CFLAR(1), EZH2(1)
0.053 0.109 4.90e-7 3.06e-6 ✓ sig. —
Granulomatosis with polyangiitis Graves ophthalmopathy
3 genes
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2 of 3 corroborated by 2+ sources
IL10(1), CTLA4(2), PTPN22(2)
0.100 0.214 4.84e-7 3.02e-6 ✓ sig. Cluster 147 →
Autoimmune musculoskeletal system disorder Crest syndrome
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DRB1(2), STAT4(1), TNPO3(1)
0.097 0.250 4.77e-7 2.97e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.