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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Lymphedema Sinusitis
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), MET(2)
0.083 0.188 1.40e-6 8.01e-6 ✓ sig. Cluster 1 →
Delirium Learning disorders
3 genes
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3 of 3 corroborated by 2+ sources
IGF1(2), IL1RN(2), TH(2)
0.068 0.300 1.39e-6 7.97e-6 ✓ sig. —
Bouillaud’s disease Cutaneous lupus erythematosus
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 1 →
Cutaneous lupus erythematosus Skeletal system disease
2 genes
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0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 1 →
Cutaneous lupus erythematosus Wheat allergic reaction
2 genes
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0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 1 →
Congenital fiber type disproportion myopathy Eichsfeld type congenital muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
ACTA1(3), SELENON(4)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. —
Congenital fiber type disproportion myopathy Rigid spine muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
ACTA1(4), SELENON(4)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. —
Congenital fiber type disproportion myopathy Multiminicore myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH7(2), SELENON(3)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. —
Ataxia telangiectasia Chromosome 17q21.31 deletion syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ATM(7), C11orf65(1)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 348 →
Autoimmune lymphoproliferative disorder Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), NRAS(4)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 18 →
Melanocytic nevus Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), HRAS(2)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 18 →
Bouillaud’s disease Gastroparesis
2 genes
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2 of 2 corroborated by 2+ sources
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 1 →
Anhydramnios autosomal recessive polycystic kidney disease
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(2), PKHD1(2)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. Cluster 157 →
Dend syndrome Hyperinsulinemic hypoglycemia
2 genes
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2 of 2 corroborated by 2+ sources
ABCC8(5), KCNJ11(6)
0.154 0.667 1.39e-6 7.96e-6 ✓ sig. —
Erectile dysfunction Sleep apnea
5 genes
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4 of 5 corroborated by 2+ sources
SLC39A8(1), NOS3(2), BCL2(3), EDN1(2), EDNRA(2)
0.047 0.102 1.38e-6 7.91e-6 ✓ sig. —
Spondyloepimetaphyseal dysplasia Spondylometaphyseal dysplasia
3 genes
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3 of 3 corroborated by 2+ sources
COL2A1(5), TRPV4(6), TONSL(3)
0.081 0.214 1.36e-6 7.81e-6 ✓ sig. —
Blindness Night blindness, congenital stationary
3 genes
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1 of 3 corroborated by 2+ sources
ABCA4(1), USH2A(1), RHO(3)
0.081 0.214 1.36e-6 7.81e-6 ✓ sig. —
Small cell lung carcinoma Transitional cell carcinoma
5 genes
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1 of 5 corroborated by 2+ sources
TP53(2), CREBBP(1), CSF3(1), KMT2A(1), EP300(1)
0.042 0.152 1.34e-6 7.72e-6 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Mayer-rokitansky-kuster-hauser syndrome
3 genes
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2 of 3 corroborated by 2+ sources
HNF1B(2), GREB1L(1), TBX6(2)
0.052 0.429 1.33e-6 7.67e-6 ✓ sig. —
Mouth neoplasms Neoplasms
5 genes
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1 of 5 corroborated by 2+ sources
TP53(2), RMDN2(1), KCNA5(1), ANGPTL2(1), RALGPS1(1)
0.047 0.106 1.31e-6 7.54e-6 ✓ sig. —
Congenital neck anomaly Nemaline myopathy
2 genes
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1 of 2 corroborated by 2+ sources
RIF1(1), NEB(7)
0.105 1.000 1.29e-6 7.42e-6 ✓ sig. Cluster 51 →
Junctional epidermolysis bullosa Lethal acantholytic epidermolysis bullosa
2 genes
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2 of 2 corroborated by 2+ sources
JUP(3), DSP(5)
0.105 1.000 1.29e-6 7.42e-6 ✓ sig. —
Congenital cardiomyopathy Melas syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ND5(2), ND4(1)
0.105 1.000 1.29e-6 7.42e-6 ✓ sig. Cluster 32 →
Lipodystrophy Restrictive dermopathy
2 genes
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2 of 2 corroborated by 2+ sources
LMNA(7), ZMPSTE24(5)
0.105 1.000 1.29e-6 7.42e-6 ✓ sig. —
Hematologic disease Polycythemia
3 genes
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1 of 3 corroborated by 2+ sources
H2BC4(1), HFE(1), JAK2(3)
0.086 0.167 1.28e-6 7.40e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.