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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diamond-blackfan anemia Erythroid hypoplasia
2 genes
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1 of 2 corroborated by 2+ sources
DIPK1A(1), RPL5(7)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. Cluster 236 →
Angioedema Thrombophilia
4 genes
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3 of 4 corroborated by 2+ sources
PLAT(4), SLC19A2(1), F5(6), PLG(4)
0.047 0.125 5.62e-6 2.89e-5 ✓ sig. —
Alcoholic hepatitis Angina pectoris
2 genes
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TNF(1), CXCL8(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. Cluster 76 →
Congenital stationary night blindness Ocular albinism
2 genes
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1 of 2 corroborated by 2+ sources
CACNA1F(2), CABP4(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Hemiplegic migraine Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(3), SCN1A(3)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Alcoholic hepatitis Cachexia
2 genes
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TNF(1), CXCL8(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. Cluster 76 →
Congenital aneurysm of ascending aorta Visceral myopathy
2 genes
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1 of 2 corroborated by 2+ sources
MYH11(4), MYLK(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH11(5), MYLK(2)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Dry eye syndrome Peptic ulcer disease
6 genes
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2 of 6 corroborated by 2+ sources
TWIST2(1), MAML3(1), IL1B(2), ADAMTSL3(1), MUC1(2), KCNB2(1)
0.035 0.105 5.44e-6 2.81e-5 ✓ sig. —
Intellectual disability with craniofacial anomalies and cardiac defects syndromic intellectual disability
2 genes
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2 of 2 corroborated by 2+ sources
KAT6A(3), H1-4(2)
0.054 1.000 5.31e-6 2.75e-5 ✓ sig. —
Craniofacial microsomia Hemifacial microsomia
2 genes
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2 of 2 corroborated by 2+ sources
FOXI3(4), SF3B2(3)
0.111 0.500 5.31e-6 2.74e-5 ✓ sig. Cluster 48 →
Esophageal varices Portal hypertension
2 genes
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PNPLA3(1), HAPLN4(1)
0.111 0.500 5.31e-6 2.74e-5 ✓ sig. Cluster 270 →
Right atrial isomerism Situs ambiguus
2 genes
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1 of 2 corroborated by 2+ sources
CERS1(1), GDF1(3)
0.087 0.667 5.31e-6 2.74e-5 ✓ sig. —
Brachydactyly Synpolydactyly
2 genes
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1 of 2 corroborated by 2+ sources
HOXD13(7), CHST11(1)
0.087 0.667 5.31e-6 2.74e-5 ✓ sig. —
Brain disease Occupational disease
3 genes
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3 of 3 corroborated by 2+ sources
MPO(2), ALB(2), TGFB1(2)
0.057 0.231 5.30e-6 2.74e-5 ✓ sig. —
Hypospadias Raynaud disease
3 genes
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2 of 3 corroborated by 2+ sources
GSTT1(2), GSTM1(2), ZFHX3(1)
0.057 0.231 5.30e-6 2.74e-5 ✓ sig. Cluster 21 →
Secondary malignant neoplasm Sickle cell anemia
3 genes
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2 of 3 corroborated by 2+ sources
HBE1(2), HBG2(2), OR51B5(1)
0.067 0.158 5.12e-6 2.65e-5 ✓ sig. Cluster 235 →
Mastocytosis Secondary malignant neoplasm
3 genes
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HBE1(1), HBG2(1), OR51B5(1)
0.067 0.158 5.12e-6 2.65e-5 ✓ sig. Cluster 235 →
Diabetic eye disease Obstructive sleep apnea syndrome
5 genes
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APOE(1), NRXN3(1), TCF7L2(1), THADA(1), FTO(1)
0.040 0.104 5.10e-6 2.64e-5 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Diffuse cutaneous systemic sclerosis
3 genes
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1 of 3 corroborated by 2+ sources
0.068 0.130 5.06e-6 2.62e-5 ✓ sig. —
Congenital clubfoot Skeletal dysplasia
3 genes
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COL5A1(1), TRPV4(1), INPP5E(1)
0.068 0.130 5.06e-6 2.62e-5 ✓ sig. —
Meningioma Nasopharyngeal carcinoma
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), PIK3CA(2), BAP1(2)
0.068 0.136 5.02e-6 2.60e-5 ✓ sig. —
Benign prostatic hyperplasia Cervical polyp
2 genes
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IRAK1BP1(1), MEI4(1)
0.056 1.000 5.02e-6 2.60e-5 ✓ sig. Cluster 37 →
Breast disease Congenital hand deformities
2 genes
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2 of 2 corroborated by 2+ sources
TP63(2), PTHLH(2)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 27 →
Extravasation of diagnostic and therapeutic materials Occupational dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
KNG1(2), BDKRB2(2)
0.143 0.286 4.95e-6 2.57e-5 ✓ sig. Cluster 250 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.