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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Skin ulcer Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
NGF(2), FGF2(2)
0.118 0.333 8.34e-6 4.16e-5 ✓ sig. Cluster 330 →
Cervical disc degenerative disorder Trigeminal neuralgia
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), TNF(2)
0.118 0.333 8.34e-6 4.16e-5 ✓ sig. Cluster 180 →
Cockayne syndrome Xeroderma pigmentosum
2 genes
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2 of 2 corroborated by 2+ sources
ERCC1(3), ERCC4(7)
0.118 0.333 8.34e-6 4.16e-5 ✓ sig. —
Chagas cardiomyopathy Obstructive sleep apnea syndrome
4 genes
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NRG1(1), TBX15(1), IZUMO1R(1), GPR83(1)
0.039 0.160 8.26e-6 4.13e-5 ✓ sig. —
Pancreatic ductal carcinoma Splenomegaly
3 genes
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NOTCH1(1), NFE2L2(1), KRAS(1)
0.061 0.150 8.23e-6 4.12e-5 ✓ sig. —
Hyperplasia Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
PTGS2(2), TGFB1(2), MMP9(2)
0.061 0.150 8.23e-6 4.12e-5 ✓ sig. —
Arthritis Bouillaud’s disease
2 genes
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0.071 0.667 8.22e-6 4.11e-5 ✓ sig. Cluster 1 →
Amino acid metabolism disorder S-adenosylhomocysteine hydrolase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
AHCY(3), MAT1A(2)
0.071 0.667 8.22e-6 4.11e-5 ✓ sig. Cluster 83 →
Amino acid metabolism disorder Hepatic methionine adenosyltransferase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
AHCY(2), MAT1A(3)
0.071 0.667 8.22e-6 4.11e-5 ✓ sig. Cluster 83 →
Amino acid metabolism disorder neurometabolic disorder due to serine deficiency
2 genes
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2 of 2 corroborated by 2+ sources
PHGDH(2), PSPH(3)
0.071 0.667 8.22e-6 4.11e-5 ✓ sig. —
Beta-hydroxyisobutyryl-coa deacylase deficiency Leukodystrophy
2 genes
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AIFM1(1), RAB33A(1)
0.071 0.667 8.22e-6 4.11e-5 ✓ sig. —
Dupuytren contracture Glaucoma
9 genes
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3 of 9 corroborated by 2+ sources
ANTXR1(1), GLIS3(2), EXOC2(1), EPDR1(2), LPP(1), UST(1), POU6F2(1), AFAP1(2), SFRP4(1)
0.029 0.101 8.20e-6 4.11e-5 ✓ sig. —
Polymyositis Scleroderma
3 genes
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3 of 3 corroborated by 2+ sources
TNF(2), HLA-DQB1(2), STAT4(2)
0.063 0.136 8.10e-6 4.06e-5 ✓ sig. Cluster 25 →
Usher syndrome Usher syndrome type 1
2 genes
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2 of 2 corroborated by 2+ sources
MYO7A(7), USH1C(7)
0.044 1.000 7.98e-6 4.00e-5 ✓ sig. —
Cone rod dystrophy and hearing loss Usher syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CEP78(7), CEP250(5)
0.044 1.000 7.98e-6 4.00e-5 ✓ sig. Cluster 26 →
Ehlers-danlos syndrome Periodontal ehlers-danlos syndrome
2 genes
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2 of 2 corroborated by 2+ sources
C1S(7), C1R(6)
0.044 1.000 7.98e-6 4.00e-5 ✓ sig. —
Dermatosparaxis ehlers-danlos syndrome Ehlers-danlos syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ADAMTS2(6), ADAMTSL2(3)
0.044 1.000 7.98e-6 4.00e-5 ✓ sig. —
Hepatic veno occlusive disease Keratosis
2 genes
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ASIP(1), GSTM1(1)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Hereditary hemochromatosis Iron deficiency anemia
2 genes
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1 of 2 corroborated by 2+ sources
HFE(1), TF(2)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Osteolysis Vascular system injury
2 genes
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SPP1(1), TNF(1)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Megacystis microcolon intestinal hypoperistalsis syndrome Tricuspid valve disease
2 genes
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1 of 2 corroborated by 2+ sources
MYH11(5), NDE1(1)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. Cluster 220 →
Brain edema Intracranial vasospasm
2 genes
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2 of 2 corroborated by 2+ sources
S100B(2), PLAT(2)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Porphyria Porphyria cutanea tarda
2 genes
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2 of 2 corroborated by 2+ sources
ALAD(6), UROD(5)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Diabetes mellitus ketosis prone monogenic diabetes
2 genes
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2 of 2 corroborated by 2+ sources
INS(2), HNF1A(2)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. —
Beckwith-wiedemann syndrome Russell-silver syndrome
2 genes
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2 of 2 corroborated by 2+ sources
IGF2(5), CDKN1C(8)
0.125 0.286 7.96e-6 3.99e-5 ✓ sig. Cluster 199 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.