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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Uterine prolapse Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.091 0.250 2.47e-5 1.16e-4 ✓ sig. Cluster 146 →
Gouty arthritis Mucositis
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), IL1RN(2)
0.091 0.250 2.47e-5 1.16e-4 ✓ sig. —
Anhedonia Panic disorder
3 genes
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COMT(1), HTR1A(1), CRH(1)
0.052 0.115 2.47e-5 1.16e-4 ✓ sig. Cluster 156 →
Keratinocyte carcinoma Primary adrenal insufficiency
2 genes
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CUX1(1), MYL10(1)
0.026 1.000 2.47e-5 1.16e-4 ✓ sig. —
Developmental delay with variable intellectual disability Intellectual disability
2 genes
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2 of 2 corroborated by 2+ sources
TCF20(5), JARID2(5)
0.026 1.000 2.40e-5 1.13e-4 ✓ sig. —
Hodgkin disease Hyper-igm immunodeficiency syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CD40LG(5), CD40(6)
0.087 0.286 2.40e-5 1.13e-4 ✓ sig. Cluster 131 →
Acromesomelic dysplasia Chondrodysplasia
2 genes
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2 of 2 corroborated by 2+ sources
BMPR1B(3), GDF5(5)
0.087 0.286 2.40e-5 1.13e-4 ✓ sig. —
Asbestosis Osteolysis
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), TNF(2)
0.087 0.286 2.40e-5 1.13e-4 ✓ sig. —
Atrioventricular block Hereditary bundle branch system defect
2 genes
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1 of 2 corroborated by 2+ sources
TRPM4(2), NKX2-5(1)
0.087 0.286 2.40e-5 1.13e-4 ✓ sig. Cluster 4 →
Atrioventricular block Emery-dreifuss muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
LMNA(6), SYNE1(6)
0.087 0.286 2.40e-5 1.13e-4 ✓ sig. —
Amphetamine or sympathomimetic abuse Non-organic psychosis
5 genes
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5 of 5 corroborated by 2+ sources
GSTP1(2), NPY1R(2), OPRM1(2), PICK1(2), SLC6A9(2)
0.035 0.072 2.40e-5 1.13e-4 ✓ sig. —
Aortic arch syndrome Retinopathy of prematurity
2 genes
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HLA-DRB1(1), HLA-B(1)
0.080 0.333 2.40e-5 1.13e-4 ✓ sig. —
Erectile dysfunction Heart disease
6 genes
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3 of 6 corroborated by 2+ sources
CDH13(1), VEGFA(2), NOS3(3), EDNRA(3), TDRD15(1), ZC3HC1(1)
0.030 0.098 2.37e-5 1.11e-4 ✓ sig. —
Hepatic insufficiency Occupational disease
2 genes
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2 of 2 corroborated by 2+ sources
ALB(2), TGFB1(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Optic neuropathy Raynaud disease
2 genes
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1 of 2 corroborated by 2+ sources
NOS3(2), IFNA2(1)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Anencephaly Hyperhomocysteinemia
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTRR(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. Cluster 121 →
Hyperhomocysteinemia Intracellular cobalamin metabolism disorder
2 genes
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2 of 2 corroborated by 2+ sources
MTRR(3), MTR(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. —
Arterial occlusive disease Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.095 0.222 2.36e-5 1.11e-4 ✓ sig. Cluster 123 →
Neural tube defects, folate-sensitive Neural tube defects, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
MTHFR(2), MTHFD1(2)
0.059 0.500 2.35e-5 1.11e-4 ✓ sig. —
Bowen’s disease Neuronal ceroid lipofuscinosis
2 genes
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2 of 2 corroborated by 2+ sources
TFAM(2), PPARGC1A(2)
0.059 0.500 2.35e-5 1.11e-4 ✓ sig. —
Carpal tunnel syndrome Stickler syndrome
3 genes
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3 of 3 corroborated by 2+ sources
COL11A1(6), VCAN(2), COL11A2(2)
0.040 0.214 2.30e-5 1.08e-4 ✓ sig. —
Emphysema Hemorrhage
3 genes
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2 of 3 corroborated by 2+ sources
SERPINA1(2), PLAU(2), TNFRSF8(1)
0.052 0.125 2.30e-5 1.08e-4 ✓ sig. —
Aortic stenosis Brain aneurysm
5 genes
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FERD3L(1), POLR1F(1), MYEOV(1), BET1L(1), RNF144A(1)
0.035 0.083 2.19e-5 1.03e-4 ✓ sig. —
Amblyopia Strabismus
3 genes
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GALC(1), KMT2D(1), SLC9A6(1)
0.053 0.120 2.19e-5 1.03e-4 ✓ sig. Cluster 281 →
Hemorrhoid Leiomyoma
3 genes
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3 of 3 corroborated by 2+ sources
EGFR(2), ESR1(2), SMAD3(2)
0.031 0.300 2.18e-5 1.03e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.