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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital heart septal defect Imperforate anus
2 genes
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2 of 2 corroborated by 2+ sources
PCSK5(2), ROBO1(2)
0.077 0.222 4.62e-5 2.10e-4 ✓ sig. —
Angelman syndrome Rett syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CDKL5(5), MECP2(7)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. Cluster 61 →
Male infertility spermatogenesis disorder Swyer syndrome
2 genes
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DHX37(1), CHD7(1)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. —
Patent ductus arteriosus Tricuspid valve disease
2 genes
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MYH11(1), PTPN11(1)
0.080 0.200 4.53e-5 2.06e-4 ✓ sig. —
Congenital cerebellar ataxia Spinocerebellar ataxia
2 genes
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2 of 2 corroborated by 2+ sources
GRID2(6), GRM1(6)
0.019 1.000 4.52e-5 2.05e-4 ✓ sig. —
Renal cysts and diabetes syndrome Testicular carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(6), GATA4(2)
0.032 0.667 4.47e-5 2.03e-4 ✓ sig. —
Renal cysts and diabetes syndrome Testicular germ cell tumor
2 genes
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2 of 2 corroborated by 2+ sources
HNF1B(6), GATA4(2)
0.032 0.667 4.47e-5 2.03e-4 ✓ sig. —
autosomal dominant polycystic kidney disease Polycystic liver disease
2 genes
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2 of 2 corroborated by 2+ sources
ALG8(5), PKD2(2)
0.069 0.286 4.46e-5 2.03e-4 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Pemphigus vulgaris
2 genes
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0.069 0.286 4.46e-5 2.03e-4 ✓ sig. Cluster 1 →
Cervical polyp Female infertility
2 genes
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IRAK1BP1(1), MEI4(1)
0.019 1.000 4.43e-5 2.01e-4 ✓ sig. —
Combined oxidative phosphorylation deficiency Mitochondrial encephalomyopathy
3 genes
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3 of 3 corroborated by 2+ sources
MTRFR(6), FARS2(6), MRPS25(4)
0.037 0.188 4.43e-5 2.01e-4 ✓ sig. Cluster 50 →
Raynaud disease Thyrotoxic periodic paralysis
2 genes
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C6orf15(1), ZFHX3(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Occupational disease Papilloma
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), NQO1(2)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Costello syndrome Hypophosphatemic rickets
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(6), LRRC56(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Hypotrichosis simplex Rheumatic disease
2 genes
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2 of 2 corroborated by 2+ sources
PSORS1C1(2), CDSN(3)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Coronary thrombosis Platelet disorder
2 genes
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1 of 2 corroborated by 2+ sources
ITGB3(2), GP6(1)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Coronary thrombosis Intracranial hemorrhage
2 genes
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1 of 2 corroborated by 2+ sources
SCAPER(1), PLAT(2)
0.083 0.167 4.32e-5 1.97e-4 ✓ sig. —
Carpal tunnel syndrome Prion disease
3 genes
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ZBTB38(1), SEMA3A(1), ADAMTS14(1)
0.038 0.176 4.26e-5 1.94e-4 ✓ sig. —
Cerebral palsy Restrictive cardiomyopathy
3 genes
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CACNA1C(1), SYNE2(1), TTN(1)
0.045 0.130 4.24e-5 1.93e-4 ✓ sig. —
Testicular disease Testicular hydrocele
2 genes
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INHBB(1), PAX8(1)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Autoimmune lymphoproliferative disorder Lymphoproliferative syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FAS(6), ITK(5)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Cardiovascular abnormalities Cartilage disease
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), EDN1(2)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Copper overload cirrhosis Nephrosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), ACTA2(2)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. —
Auditory system disease Vascular brain injury
2 genes
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BMAL1(1), RASSF10(1)
0.083 0.182 4.20e-5 1.91e-4 ✓ sig. Cluster 94 →
Atrioventricular block Cardiac conduction disease
2 genes
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2 of 2 corroborated by 2+ sources
TRPM4(2), LMNA(3)
0.080 0.222 4.11e-5 1.88e-4 ✓ sig. Cluster 4 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.