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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dry eye syndrome Polymyositis
3 genes
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2 of 3 corroborated by 2+ sources
THSD7A(1), IL1B(2), IL6(2)
0.039 0.136 7.05e-5 2.52e-4 ✓ sig. Cluster 25 →
Penile hypospadia Polymicrogyria
2 genes
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1 of 2 corroborated by 2+ sources
FIG4(3), PEX1(1)
0.063 0.250 7.04e-5 2.52e-4 ✓ sig. —
Severe congenital neutropenia Tubulointerstitial kidney disease
2 genes
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1 of 2 corroborated by 2+ sources
SEC61A1(4), RUVBL1(1)
0.067 0.222 6.97e-5 2.50e-4 ✓ sig. —
Aniridia Keratitis
2 genes
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2 of 2 corroborated by 2+ sources
ELP4(5), PAX6(6)
0.067 0.222 6.97e-5 2.50e-4 ✓ sig. —
Congenital epicanthus Pancytopenia
2 genes
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0.074 0.143 6.94e-5 2.49e-4 ✓ sig. —
Avascular necrosis of bone Spondylometaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(5), TRPV4(5)
0.074 0.143 6.94e-5 2.49e-4 ✓ sig. Cluster 21 →
Osteonecrosis of medial femoral condyle Spondylometaphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
COL2A1(5), TRPV4(5)
0.074 0.143 6.94e-5 2.49e-4 ✓ sig. Cluster 21 →
Basal ganglia disease Tremor
2 genes
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2 of 2 corroborated by 2+ sources
CYP2D6(2), DRD3(3)
0.074 0.154 6.87e-5 2.46e-4 ✓ sig. —
Bone fracture Glomerulonephritis
5 genes
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1 of 5 corroborated by 2+ sources
TPCN2(1), ESR1(3), CCDC102B(1), DOK6(1), ACAP2(1)
0.031 0.074 6.81e-5 2.44e-4 ✓ sig. —
Antisocial personality disorder Conduct disorder
2 genes
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DRD4(1), HTR1B(1)
0.036 0.500 6.68e-5 2.40e-4 ✓ sig. Cluster 57 →
Epithelial ovarian carcinoma Generalized lipodystrophy
2 genes
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2 of 2 corroborated by 2+ sources
FOS(2), CAV1(2)
0.059 0.286 6.66e-5 2.39e-4 ✓ sig. Cluster 71 →
Oral cavity carcinoma Pemphigus vulgaris
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRA(1), HLA-DQB1(2)
0.059 0.286 6.66e-5 2.39e-4 ✓ sig. Cluster 1 →
Diffuse gastric adenocarcinoma Urinary system neoplasms
2 genes
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PSCA(1), LY6K(1)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Patent ductus arteriosus
2 genes
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2 of 2 corroborated by 2+ sources
FLNA(2), MYH11(2)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —
Body weight Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
BDNF(2), POMC(2)
0.074 0.167 6.64e-5 2.38e-4 ✓ sig. —
Bilateral microtia with deafness and cleft palate syndrome Microtia
1 gene
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1 of 1 corroborated by 2+ sources
HOXA2(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Bilateral multicystic dysplastic kidney Renal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 23 →
Bilateral multicystic dysplastic kidney Giant cell tumor of tendon sheath
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 23 →
Bilateral multicystic dysplastic kidney Multicystic dysplastic kidney
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 23 →
Bilateral vestibulopathy Cerebellar ataxia with neuropathy and bilateral vestibular areflexia
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 190 →
Biotin-thiamine-responsive basal ganglia disease Thiamine-responsive encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Birk-landau-perez syndrome psychomotor regression-oculomotor apraxia-movement disorder-nephropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC30A9(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Biventricular noncompaction cardiomyopathy Myosin storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy MYH7-related skeletal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 89 →
Biventricular noncompaction cardiomyopathy dilated cardiomyopathy 1S
1 gene
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1 of 1 corroborated by 2+ sources
MYH7(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 89 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.