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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ankle fracture Bone fracture
2 genes
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CPED1(1), WNT16(1)
0.029 1.000 1.92e-5 9.14e-5 ✓ sig. —
Amnesia Gastrointestinal hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
AVP(2), CSF2(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Rickets Uremia
2 genes
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2 of 2 corroborated by 2+ sources
VDR(2), PTH(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Cervical disc degenerative disorder Uremia
2 genes
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2 of 2 corroborated by 2+ sources
TGFB1(2), SPARC(2)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. Cluster 180 →
Corneal neovascularization Diabetes microvascular complications
2 genes
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2 of 2 corroborated by 2+ sources
VEGFA(3), IL1RN(3)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Cyclin-dependent kinase-like 5 deficiency Gross motor development delay
2 genes
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CACNA1A(1), MECP2(1)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. Cluster 61 →
Developmental regression Focal onset epileptic seizure
2 genes
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SCN8A(1), GNB1(1)
0.087 0.333 1.93e-5 9.17e-5 ✓ sig. —
Neurodegenerative disorder Splenomegaly
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), MAPT(2)
0.051 0.150 1.94e-5 9.19e-5 ✓ sig. —
Dysarthria Xeroderma pigmentosum-cockayne syndrome
2 genes
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1 of 2 corroborated by 2+ sources
BIVM-ERCC5(1), ERCC5(3)
0.077 0.400 1.94e-5 9.23e-5 ✓ sig. —
Cystine urolithiasis Myasthenic syndrome
2 genes
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1 of 2 corroborated by 2+ sources
PREPL(5), SLC3A1(1)
0.048 0.667 1.97e-5 9.35e-5 ✓ sig. —
Coronary thrombosis Von willebrand disorder
2 genes
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1 of 2 corroborated by 2+ sources
PLAT(2), GP6(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. —
Hyperproinsulinemia Latent autoimmune diabetes in adults
2 genes
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2 of 2 corroborated by 2+ sources
INS(6), INS-IGF2(2)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. —
Congenital arteriovenous malformation Hypophosphatemic rickets
2 genes
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HRAS(1), LRRC56(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. Cluster 18 →
Lipoma Venous insufficiency
2 genes
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SLC19A2(1), F5(1)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. Cluster 37 →
Ataxia, spastic, autosomal recessive Spastic ataxia
2 genes
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2 of 2 corroborated by 2+ sources
KIF1C(5), MARS2(5)
0.028 1.000 2.04e-5 9.66e-5 ✓ sig. —
Primary graft dysfunction Vasculitis
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), SENP1(2)
0.063 0.500 2.05e-5 9.72e-5 ✓ sig. Cluster 136 →
Autoimmune lymphoproliferative disorder Myelomonocytic leukemia
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), NRAS(4)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Ductal carcinoma Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(2), TP53(2)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Dwarfism Meier-gorlin syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ORC1(5), DONSON(2)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. Cluster 171 →
Headache Stomatitis
2 genes
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1 of 2 corroborated by 2+ sources
CSF3(2), IFNA2(1)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Cryptorchidism Hypospadias
3 genes
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2 of 3 corroborated by 2+ sources
AR(4), KAT6B(1), HSD3B2(2)
0.050 0.150 2.08e-5 9.86e-5 ✓ sig. —
Hepatic encephalopathy Huntington disease
3 genes
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3 of 3 corroborated by 2+ sources
GLUL(2), MAOA(2), MAOB(2)
0.041 0.214 2.09e-5 9.88e-5 ✓ sig. Cluster 57 →
Congenital anomalies of the kidney and urinary tract Vacterl association
3 genes
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NOTCH2(1), SALL1(1), TRAP1(1)
0.045 0.188 2.09e-5 9.89e-5 ✓ sig. —
Cervical polyp Sjogren syndrome
2 genes
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1 of 2 corroborated by 2+ sources
IRAK1BP1(3), MEI4(1)
0.028 1.000 2.10e-5 9.92e-5 ✓ sig. —
Hereditary hemorrhagic telangiectasia Hydrops fetalis
2 genes
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RASA1(1), CCNH(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. Cluster 40 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.