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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Methylmalonic acidemia methylmalonic aciduria and homocystinuria
2 genes
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2 of 2 corroborated by 2+ sources
ZNF143(2), THAP11(5)
0.071 1.000 2.96e-6 1.60e-5 ✓ sig. Cluster 246 →
Ataxia with oculomotor apraxia Spinocerebellar ataxia
3 genes
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3 of 3 corroborated by 2+ sources
SETX(6), APTX(5), PIK3R5(6)
0.028 0.600 2.96e-6 1.60e-5 ✓ sig. —
Chordoma Maffucci syndrome
2 genes
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2 of 2 corroborated by 2+ sources
IDH2(3), IDH1(4)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. —
Disruptive impulse-control and conduct disorder Hyperproinsulinemia
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 325 →
Glucose-6-phosphate dehydrogenase deficiency Granulomatous disease
2 genes
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1 of 2 corroborated by 2+ sources
G6PD(4), IFNG(1)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 87 →
Cardiac conduction disease Paroxysmal familial ventricular fibrillation
2 genes
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1 of 2 corroborated by 2+ sources
LMNA(1), SCN5A(2)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 4 →
Anencephaly Coach syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CC2D2A(3), RPGRIP1L(3)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. —
Charge syndrome Choanal atresia syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KMT2D(4), CHD7(7)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. —
Chondrosarcoma Extraskeletal myxoid chondrosarcoma
2 genes
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2 of 2 corroborated by 2+ sources
TAF15(4), NR4A3(4)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. —
Polycythemia vera Thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(2), HBB(2)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 72 →
Intracranial thrombosis Von willebrand disorder
2 genes
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2 of 2 corroborated by 2+ sources
PLAT(2), VWF(8)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 266 →
Bernard-soulier syndrome Von willebrand disorder
2 genes
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2 of 2 corroborated by 2+ sources
VWF(8), GP1BA(8)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 266 →
Immunodeficiency-centromeric instability-facial anomalies syndrome Kabuki syndrome
2 genes
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2 of 2 corroborated by 2+ sources
DNMT3B(2), ZBTB24(2)
0.154 0.400 3.03e-6 1.63e-5 ✓ sig. Cluster 335 →
Bouillaud’s disease Lymphedema
2 genes
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2 of 2 corroborated by 2+ sources
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Lymphedema Skeletal system disease
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Lymphedema Wheat allergic reaction
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Bruxism Rett syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CDKL5(4), MECP2(7)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 61 →
Arachnoid cysts Rett syndrome
2 genes
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GPHN(1), PALS1(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. —
Bouillaud’s disease Thyroiditis
2 genes
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2 of 2 corroborated by 2+ sources
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Skeletal system disease Thyroiditis
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Thyroiditis Wheat allergic reaction
2 genes
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0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 1 →
Cerebral thrombosis Hemophilia a
2 genes
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PLAT(1), VWF(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. —
Hydrops fetalis Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.111 0.667 3.04e-6 1.63e-5 ✓ sig. Cluster 40 →
Hypertriglyceridemia Infantile hypertriglyceridemia with hepatosteatosis
2 genes
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2 of 2 corroborated by 2+ sources
CREB3L3(5), GPD1(6)
0.069 1.000 3.19e-6 1.71e-5 ✓ sig. Cluster 254 →
Gonadal dysgenesis Xq27.3 q28 duplication syndrome
2 genes
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1 of 2 corroborated by 2+ sources
CLPP(1), FMR1(3)
0.069 1.000 3.19e-6 1.71e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.