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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Myelomonocytic leukemia Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), NRAS(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Combined immunodeficiency with granulomatosis Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(4), RAG2(4)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 173 →
Beta-hydroxyisobutyryl-coa deacylase deficiency Deafness, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Angelman syndrome Bruxism
2 genes
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1 of 2 corroborated by 2+ sources
CDKL5(3), MECP2(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 61 →
Achondrogenesis Epiphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
SLC26A2(3), COL2A1(5)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Combined saposin deficiency Gaucher disease
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(7), CDH23(1)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. Cluster 118 →
Embryonal carcinoma Hodgkin disease
2 genes
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TNFRSF8(1), TNFSF8(1)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Atrichia with papular lesions Hypotrichosis
2 genes
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2 of 2 corroborated by 2+ sources
HR(6), HRURF(4)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Chondrodysplasia X-linked chondrodysplasia punctata
2 genes
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2 of 2 corroborated by 2+ sources
ARSL(6), EBP(5)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Coffin-siris syndrome Rhabdoid tumor predisposition syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SMARCA4(7), SMARCB1(7)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. Cluster 120 →
Thyroid cancer Tongue neoplasms
3 genes
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1 of 3 corroborated by 2+ sources
TERT(1), SOD2(1), TYMS(2)
0.071 0.300 1.17e-6 6.78e-6 ✓ sig. —
Hemorrhage Liver failure
4 genes
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4 of 4 corroborated by 2+ sources
VEGFA(2), F2(2), POMC(2), F7(2)
0.055 0.167 1.17e-6 6.78e-6 ✓ sig. —
Diabetes complications Diabetic angiopathies
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), HP(2)
0.079 0.250 1.17e-6 6.80e-6 ✓ sig. —
Diabetes complications Diabetic peripheral angiopathy
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), HP(2)
0.079 0.250 1.17e-6 6.80e-6 ✓ sig. —
Aplastic anemia Fanconi anemia
4 genes
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2 of 4 corroborated by 2+ sources
GSTT1(1), TNF(2), GSTM1(1), FANCM(6)
0.059 0.125 1.20e-6 6.96e-6 ✓ sig. —
Cutaneous lupus erythematosus Membranous glomerulonephritis
3 genes
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2 of 3 corroborated by 2+ sources
0.075 0.273 1.21e-6 6.99e-6 ✓ sig. Cluster 1 →
Cystic kidney disease Senior-loken syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CEP290(6), SDCCAG8(5), INVS(2)
0.081 0.231 1.21e-6 7.00e-6 ✓ sig. Cluster 8 →
Corneal disease Keratoconus
4 genes
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1 of 4 corroborated by 2+ sources
COL5A1(1), LRP1B(1), RXRA(1), ZNF469(2)
0.033 0.333 1.21e-6 7.01e-6 ✓ sig. —
Barrett esophagus Esophageal neoplasms
6 genes
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6 of 6 corroborated by 2+ sources
CDH13(2), PTGS2(2), CYP26A1(2), NR1I2(2), RPRM(2), SST(2)
0.043 0.083 1.22e-6 7.06e-6 ✓ sig. —
Bone disease Female infertility
7 genes
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5 of 7 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), CYP19A1(2), ESR1(3), IGF1(2), AHR(2), LEPR(2)
0.039 0.085 1.23e-6 7.12e-6 ✓ sig. —
Digestive system disease Small cell lung carcinoma
7 genes
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1 of 7 corroborated by 2+ sources
ALDH1A2(1), HLA-DQA1(1), HLA-DRB1(1), NRP1(1), CSF3(2), MARCHF1(1), NEDD9(1)
0.039 0.077 1.25e-6 7.23e-6 ✓ sig. —
Asbestosis Oral submucous fibrosis
3 genes
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2 of 3 corroborated by 2+ sources
GSTT1(2), TNF(2), GSTM1(1)
0.086 0.176 1.26e-6 7.29e-6 ✓ sig. —
Disruptive impulse-control and conduct disorder Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma Hereditary breast-ovarian cancer syndrome
2 genes
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2 of 2 corroborated by 2+ sources
BRCA2(4), BRCA1(4)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Cadasil Chilblain lupus erythematosus
2 genes
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1 of 2 corroborated by 2+ sources
TREX1(5), ATRIP(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 150 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.