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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Deafness enamel hypoplasia nail defects Zellweger spectrum disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(3), PEX1(3)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Deafness-enamel hypoplasia-nail defects syndrome Zellweger spectrum disorder
2 genes
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2 of 2 corroborated by 2+ sources
PEX6(2), PEX1(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Nephrotic syndrome, steroid-resistant, autosomal recessive Steroid-resistant nephrotic syndrome
2 genes
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AXDND1(1), NPHS2(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Optic neuritis Visual system disorder
2 genes
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EFEMP1(1), PNPT1(1)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. —
Cholesterol embolism Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 123 →
Intracranial embolism and thrombosis Intracranial hemorrhage
2 genes
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2 of 2 corroborated by 2+ sources
PLAU(2), PLAT(2)
0.143 1.000 6.58e-7 3.99e-6 ✓ sig. Cluster 123 →
Kidney neoplasms Sezary syndrome
4 genes
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BRAF(1), MAPK1(1), CDKN1B(1), IL32(1)
0.063 0.148 6.56e-7 3.99e-6 ✓ sig. —
Nephrosclerosis Oral submucous fibrosis
3 genes
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3 of 3 corroborated by 2+ sources
TGFB1(2), COL1A1(2), FGF2(2)
0.094 0.214 6.76e-7 4.10e-6 ✓ sig. —
Gastric ulcer Sleep apnea
5 genes
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NOS3(1), TNF(1), NRG1(1), ABO(1), MMP9(1)
0.051 0.102 6.77e-7 4.10e-6 ✓ sig. —
Cardiovascular abnormalities Urethral obstruction
3 genes
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3 of 3 corroborated by 2+ sources
AGT(2), NOS2(2), EDN1(2)
0.086 0.273 6.99e-7 4.23e-6 ✓ sig. —
Bile duct cancer Liver cancer
2 genes
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MAPK1(1), YPEL1(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
C3 glomerulonephritis Thrombotic microangiopathy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(3), CFH(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Atypical hemolytic uremic syndrome C3 glomerulonephritis
2 genes
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2 of 2 corroborated by 2+ sources
CFI(3), CFH(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Calcium metabolism disorders Chondrocalcinosis
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(5), OTULIN(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 208 →
Calcium metabolism disorders Craniometaphyseal dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
ANKH(6), OTULIN(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 208 →
Capillary malformation Capillary malformation-arteriovenous malformation
2 genes
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2 of 2 corroborated by 2+ sources
GNAQ(3), PIK3CA(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 40 →
Capillary malformation-arteriovenous malformation Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(7), CCNH(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 40 →
Chromosome y microdeletion syndrome Male infertility y chromosome microdeletion
2 genes
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2 of 2 corroborated by 2+ sources
TSPY1(2), USP9Y(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Adult myoclonic epilepsy Benign adult familial myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ADRA2B(2), SAMD12(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 357 →
Aicardi goutieres syndrome Chilblain lupus
2 genes
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2 of 2 corroborated by 2+ sources
SAMHD1(4), TREX1(3)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 150 →
Angiokeratoma Cavernous malformations of cns
2 genes
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ANKIB1(1), KRIT1(1)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 308 →
Mesangiocapillary glomerulonephritis Thrombotic microangiopathy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(2), CFH(2)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Ruptured abdominal aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Ruptured aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Ruptured thoracic aortic aneurysm Shprintzen-goldberg syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.