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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Giant cell arteritis Pleural diseases
3 genes
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3 of 3 corroborated by 2+ sources
IL4(2), IFNG(2), CCL2(2)
0.115 0.300 1.60e-7 1.08e-6 ✓ sig. —
Dentinogenesis imperfecta Osteoporosis-pseudoglioma syndrome
4 genes
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4 of 4 corroborated by 2+ sources
AMBN(2), COL1A1(2), COL1A2(2), DSPP(8)
0.065 0.250 1.60e-7 1.08e-6 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Dentinogenesis imperfecta
4 genes
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4 of 4 corroborated by 2+ sources
AMBN(2), COL1A1(2), COL1A2(2), DSPP(8)
0.065 0.250 1.60e-7 1.08e-6 ✓ sig. —
Orofacial cleft Tooth agenesis
7 genes
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6 of 7 corroborated by 2+ sources
IRF6(5), BMP4(5), LRP6(5), MMP9(1), MSX1(6), FGFR1(2), AXIN2(2)
0.037 0.171 1.61e-7 1.09e-6 ✓ sig. Cluster 63 →
Congenital stationary night blindness inherited retinal dystrophy
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(4), GNAT1(4), SLC24A1(4)
0.120 0.250 1.64e-7 1.11e-6 ✓ sig. Cluster 151 →
Cortical development malformation Hemimegalencephaly
3 genes
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3 of 3 corroborated by 2+ sources
AKT3(3), PIK3CA(3), MTOR(3)
0.094 0.429 1.67e-7 1.13e-6 ✓ sig. —
Congestive ophthalmopathy Granulomatosis with polyangiitis
3 genes
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2 of 3 corroborated by 2+ sources
IL10(1), CTLA4(2), PTPN22(2)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 147 →
Avascular necrosis of bone Senile cataract
3 genes
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CAT(1), GSTT1(1), GSTM1(1)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 21 →
Osteonecrosis of medial femoral condyle Senile cataract
3 genes
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CAT(1), GSTT1(1), GSTM1(1)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 21 →
Oculocutaneous albinism Sebaceous gland disease
3 genes
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3 of 3 corroborated by 2+ sources
TYR(6), MC1R(5), SLC45A2(6)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. —
Carotid artery stenosis Coronary restenosis
3 genes
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3 of 3 corroborated by 2+ sources
MMP3(2), SPP1(2), MTHFR(2)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 195 →
Granulomatosis with polyangiitis Myopathic ophthalmopathy
3 genes
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2 of 3 corroborated by 2+ sources
IL10(1), CTLA4(2), PTPN22(2)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 147 →
Avascular necrosis of bone Raynaud disease
3 genes
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3 of 3 corroborated by 2+ sources
NOS3(2), GSTT1(2), GSTM1(2)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 21 →
Osteonecrosis of medial femoral condyle Raynaud disease
3 genes
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3 of 3 corroborated by 2+ sources
NOS3(2), GSTT1(2), GSTM1(2)
0.120 0.231 1.70e-7 1.15e-6 ✓ sig. Cluster 21 →
Medulloblastoma Ovarian neoplasms
7 genes
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2 of 7 corroborated by 2+ sources
STAT3(1), CTNNB1(3), ERBB2(1), MYC(1), BRCA2(3), CCNE1(1), SKP2(1)
0.040 0.143 1.75e-7 1.18e-6 ✓ sig. —
Pancreatic trypsinogen deficiency Vitamin d dependent rickets
2 genes
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PRSS1(1), TRB(1)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 396 →
Emery-dreifuss muscular dystrophy X-linked emery-dreifuss muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
FHL1(4), EMD(5)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Astigmatism Dyschromatopsia
2 genes
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PHF3(1), EYS(1)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Benign epithelial tumor of salivary glands Russell-silver syndrome
2 genes
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2 of 2 corroborated by 2+ sources
HMGA2(2), PLAG1(2)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
17 alpha-hydroxyprogesterone aldolase deficiency 46,xy disorder of sex developmen
2 genes
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2 of 2 corroborated by 2+ sources
AKR1C2(2), AKR1C4(2)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 344 →
Acral peeling skin syndrome Peeling skin syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CSTA(4), TGM5(4)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Acromesomelic dysplasia Congenital scoliosis
2 genes
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1 of 2 corroborated by 2+ sources
FBN1(2), LTBP3(1)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 52 →
Apoceruloplasmin deficiency Iron overload
2 genes
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2 of 2 corroborated by 2+ sources
CP(2), SLC40A1(2)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 231 →
Apolipoprotein a-i deficiency Hypoalphalipoproteinemia
2 genes
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2 of 2 corroborated by 2+ sources
APOA1(5), ABCA1(7)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. —
Congenital exomphalos Congenital omphalocele
2 genes
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CHRNA7(1), PCSK5(1)
0.250 1.000 1.77e-7 1.18e-6 ✓ sig. Cluster 94 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.