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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cystinuria Hypotonia-cystinuria syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PREPL(2), SLC3A1(7)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. —
Penile neoplasms Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), HRAS(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 18 →
Episodic kinesigenic dyskinesia Paroxysmal dystonic choreoathetosis
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(5), KCNA1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 58 →
Episodic kinesigenic dyskinesia Paroxysmal nonkinesigenic dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(6), KCNA1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 58 →
Episodic pain syndrome Paroxysmal extreme pain disorder
2 genes
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2 of 2 corroborated by 2+ sources
SCN10A(5), SCN11A(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 164 →
Bouillaud’s disease Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Acrofacial dysostosis Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(3), EVC2(5)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 289 →
Acute disseminated encephalomyelitis Autoimmune polyendocrine syndrome
2 genes
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0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Bladder cancer Seminoma
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), HRAS(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 18 →
Bladder cancer Schimmelpenning-feuerstein-mims syndrome
2 genes
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KRAS(1), HRAS(1)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 18 →
Budd-chiari syndrome Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
JAK2(4), F5(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 37 →
Carnevale syndrome Craniofacial ulnar renal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 353 →
Developmental venous anomaly Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. —
Doyne honeycomb retinal dystrophy Thrombotic microangiopathy
2 genes
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1 of 2 corroborated by 2+ sources
CFI(1), CFH(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 107 →
Congenital fusion of ribs Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
2 genes
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1 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 398 →
Arthrogryposis Distal arthrogryposis
3 genes
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3 of 3 corroborated by 2+ sources
ECEL1(5), MYH3(5), TPM2(5)
0.120 0.273 1.51e-7 1.03e-6 ✓ sig. Cluster 202 →
Autoimmune hepatitis Narcolepsy
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(4), HLA-DQB1(4), HLA-DPB1(1), PDCD1(2)
0.059 0.132 1.51e-7 1.03e-6 ✓ sig. —
Adenoid cystic carcinoma Cholangiocarcinoma
6 genes
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1 of 6 corroborated by 2+ sources
PTEN(1), TP53(1), ARID1A(1), KMT2C(1), FGFR2(1), BRCA1(2)
0.045 0.158 1.50e-7 1.03e-6 ✓ sig. —
Intrahepatic cholestasis Intrahepatic cholestasis of pregnancy
3 genes
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3 of 3 corroborated by 2+ sources
ATP8B1(3), ABCB11(3), ABCB4(4)
0.111 0.333 1.57e-7 1.06e-6 ✓ sig. Cluster 319 →
Polynesian bronchiectasis Situs inversus
3 genes
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DNAH5(1), DNAH11(1), DNAAF19(1)
0.111 0.333 1.57e-7 1.06e-6 ✓ sig. —
Diabetic polyneuropathy Hypertensive nephropathy
3 genes
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NYAP2(1), TCF7L2(1), FTO(1)
0.111 0.333 1.57e-7 1.06e-6 ✓ sig. —
Developmental regression Nystagmus
4 genes
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NMNAT1(1), GALC(1), GNB1(1), SGSH(1)
0.069 0.222 1.57e-7 1.06e-6 ✓ sig. —
Diabetic nephropathy type 2 Hypertensive heart disease
3 genes
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TCF7L2(1), FTO(1), PDILT(1)
0.115 0.300 1.60e-7 1.08e-6 ✓ sig. —
Endometrial hyperplasia Hemangiosarcoma
3 genes
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3 of 3 corroborated by 2+ sources
TP53(2), CTNNB1(2), KRAS(2)
0.115 0.300 1.60e-7 1.08e-6 ✓ sig. Cluster 3 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.