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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Tubulointerstitial kidney disease
2 genes
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2 of 2 corroborated by 2+ sources
APOA4(4), UMOD(4)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 23 →
Benign neonatal-infantile seizures Epilepsy of infancy with migrating focal seizures
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(3), SCN2A(3)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Benign recurrent intrahepatic cholestasis Intrahepatic cholestasis
2 genes
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2 of 2 corroborated by 2+ sources
ATP8B1(3), ABCB11(4)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 319 →
Osteomyelitis Tongue cancer
2 genes
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2 of 2 corroborated by 2+ sources
TERT(2), HLA-DQB1(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. Cluster 1 →
Benign neonatal-infantile seizures Malignant migrating partial seizures of infancy
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ2(2), SCN2A(2)
0.200 1.000 3.04e-7 1.95e-6 ✓ sig. —
Iron deficiency anemia Iron metabolism disorder
3 genes
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2 of 3 corroborated by 2+ sources
HFE(1), TMPRSS6(3), TFRC(2)
0.100 0.300 3.02e-7 1.95e-6 ✓ sig. —
Polyarticular juvenile idiopathic arthritis Scleroderma
4 genes
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4 of 4 corroborated by 2+ sources
IL2(2), HLA-DQB1(2), STAT4(4), CD247(3)
0.070 0.143 3.04e-7 1.95e-6 ✓ sig. —
Aneurysm Peripheral vascular disease
4 genes
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1 of 4 corroborated by 2+ sources
CELSR2(1), DAB2IP(2), LPA(1), PSRC1(1)
0.070 0.148 2.96e-7 1.92e-6 ✓ sig. —
Dermatitis Eosinophilia
6 genes
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4 of 6 corroborated by 2+ sources
EMSY(1), HLA-DQA1(3), HLA-DRB1(3), SHARPIN(2), CLEC16A(1), DSG1(3)
0.041 0.158 2.96e-7 1.92e-6 ✓ sig. Cluster 16 →
Congenital structural myopathy Nemaline myopathy
3 genes
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2 of 3 corroborated by 2+ sources
ANKRD1(1), NEB(7), TPM3(4)
0.107 0.250 2.93e-7 1.90e-6 ✓ sig. —
Azoospermia Pemphigus vulgaris
3 genes
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0.081 0.429 2.84e-7 1.84e-6 ✓ sig. —
Liver failure Proteinuria
5 genes
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5 of 5 corroborated by 2+ sources
VEGFA(2), FAS(2), POMC(2), ALB(2), IL1RN(2)
0.056 0.119 2.79e-7 1.81e-6 ✓ sig. —
Cowden disease Meningioma
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(6), AKT1(7), PIK3CA(7)
0.097 0.333 2.78e-7 1.81e-6 ✓ sig. —
Blood coagulation disorder Disseminated intravascular coagulation
3 genes
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3 of 3 corroborated by 2+ sources
F2(3), SERPINC1(2), PROC(3)
0.097 0.333 2.78e-7 1.81e-6 ✓ sig. Cluster 55 →
Brain neoplasms Diabetes microvascular complications
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), SOD2(3)
0.071 0.500 2.76e-7 1.80e-6 ✓ sig. —
Aortic arch syndrome Dermatitis
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DRB1(2), HLA-B(2), HLA-A(2)
0.071 0.500 2.76e-7 1.80e-6 ✓ sig. —
Hereditary spastic paraplegia Spastic paraplegia, x-linked
3 genes
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1 of 3 corroborated by 2+ sources
SPAST(1), PLP1(3), RAB9B(1)
0.029 1.000 2.74e-7 1.78e-6 ✓ sig. —
inherited retinal dystrophy Oguchi disease
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(2), GNAT1(2), SLC24A1(2)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. Cluster 151 →
Granulomatosis with polyangiitis Systemic scleroderma
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DPB1(3), FCGR3B(2), HLA-DPA1(3)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. —
Anophthalmia Coloboma
3 genes
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2 of 3 corroborated by 2+ sources
ELP4(1), PAX6(4), RAX(3)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. —
Beta thalassemia Spherocytosis
3 genes
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3 of 3 corroborated by 2+ sources
CAD(2), UMPS(2), DHODH(2)
0.103 0.300 2.61e-7 1.70e-6 ✓ sig. —
Beta thalassemia Iron deficiency anemia
3 genes
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1 of 3 corroborated by 2+ sources
HFE(1), TNF(1), TFRC(2)
0.103 0.300 2.61e-7 1.70e-6 ✓ sig. —
Rhabdomyosarcoma Wilms tumor
4 genes
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2 of 4 corroborated by 2+ sources
ARID1A(1), IGF2(3), BCOR(1), DICER1(3)
0.071 0.148 2.61e-7 1.70e-6 ✓ sig. —
Central nervous system non-hodgkin lymphoma Membranous glomerulonephritis
3 genes
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2 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), IRF4(1)
0.083 0.429 2.57e-7 1.68e-6 ✓ sig. Cluster 1 →
Auditory neuropathy Pendred syndrome
3 genes
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OTOF(1), DIAPH1(1), MYO7A(1)
0.083 0.429 2.57e-7 1.68e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.