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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Coronary restenosis Mitral valve disease
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), MTHFR(2)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. Cluster 195 →
Coronary restenosis Rheumatic disease of mitral valve
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), MTHFR(2)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. Cluster 195 →
Coronary restenosis Rheumatic mitral regurgitation
2 genes
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2 of 2 corroborated by 2+ sources
ACE(2), MTHFR(2)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. Cluster 195 →
Cleft palate and bilateral cleft lip Deafness, sensorineural, autosomal-mitochondrial type
2 genes
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1 of 2 corroborated by 2+ sources
ND1(1), COX1(2)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. —
Cleft palate and bilateral cleft lip Congenital cardiomyopathy
2 genes
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ND5(1), ND4(1)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. Cluster 32 →
Distal myopathy Welander distal myopathy
2 genes
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2 of 2 corroborated by 2+ sources
SQSTM1(3), TIA1(6)
0.133 1.000 7.68e-7 4.57e-6 ✓ sig. —
Autoimmune polyendocrine syndrome Diabetic nephropathy type 1
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Diabetic nephropathy type 1 Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Diabetic nephropathy type 1 Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Paroxysmal nocturnal hemoglobinuria
2 genes
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0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Primary graft dysfunction Vascular remodeling
2 genes
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GATA2(1), SENP1(1)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 136 →
Budd-chiari syndrome Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
JAK2(4), CALR(3)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. —
Cafe-au-lait spots Neurofibromatosis
2 genes
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2 of 2 corroborated by 2+ sources
NF1(6), SPRED1(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 77 →
Cafe-au-lait spots Neurofibromatosis-noonan syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NF1(6), SPRED1(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 77 →
Carotid artery thrombosis Thrombasthenia
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(2), ITGA2B(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 33 →
Central nervous system disease Diabetes microvascular complications
2 genes
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2 of 2 corroborated by 2+ sources
EPO(2), SOD2(3)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 305 →
Cerebral cavernous malformation Developmental venous anomaly
2 genes
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2 of 2 corroborated by 2+ sources
PDCD10(7), CCM2(7)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 308 →
Autoimmune polyendocrine syndrome Cervical intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cervical intraepithelial neoplasia Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cervical intraepithelial neoplasia Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Cold paroxysmal hemoglobinuria
2 genes
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0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Intestinal pseudo-obstruction Visceral neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
NDE1(1), ACTG2(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 220 →
Cold paroxysmal hemoglobinuria Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Cryoglobulinemia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cryoglobulinemia Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.