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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetes complications Diabetic peripheral angiopathy
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), HP(2)
0.079 0.250 1.17e-6 6.80e-6 ✓ sig. —
Hemorrhage Liver failure
4 genes
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4 of 4 corroborated by 2+ sources
VEGFA(2), F2(2), POMC(2), F7(2)
0.055 0.167 1.17e-6 6.78e-6 ✓ sig. —
Thyroid cancer Tongue neoplasms
3 genes
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1 of 3 corroborated by 2+ sources
TERT(1), SOD2(1), TYMS(2)
0.071 0.300 1.17e-6 6.78e-6 ✓ sig. —
Chondrodysplasia X-linked chondrodysplasia punctata
2 genes
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2 of 2 corroborated by 2+ sources
ARSL(6), EBP(5)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Coffin-siris syndrome Rhabdoid tumor predisposition syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SMARCA4(7), SMARCB1(7)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. Cluster 120 →
Embryonal carcinoma Hodgkin disease
2 genes
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TNFRSF8(1), TNFSF8(1)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Combined saposin deficiency Gaucher disease
2 genes
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1 of 2 corroborated by 2+ sources
PSAP(7), CDH23(1)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. Cluster 118 →
Atrichia with papular lesions Hypotrichosis
2 genes
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2 of 2 corroborated by 2+ sources
HR(6), HRURF(4)
0.111 1.000 1.15e-6 6.66e-6 ✓ sig. —
Beta-hydroxyisobutyryl-coa deacylase deficiency Deafness, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(4), RAB33A(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Angelman syndrome Bruxism
2 genes
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1 of 2 corroborated by 2+ sources
CDKL5(3), MECP2(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 61 →
Brachycephaly Saethre-chotzen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), TWIST1(6)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Brain edema Hematoma
2 genes
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S100B(1), PLAT(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Brain edema Spinal cord compression
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), PLAT(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Myelomonocytic leukemia Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), NRAS(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Combined immunodeficiency with granulomatosis Omenn syndrome
2 genes
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2 of 2 corroborated by 2+ sources
RAG1(4), RAG2(4)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 173 →
Achondrogenesis Epiphyseal dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
SLC26A2(3), COL2A1(5)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Congenital afibrinogenemia Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGB(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Congenital fibrinogen deficiency Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGB(3)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Congenital hypofibrinogenemia Deep vein thrombosis
2 genes
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FGA(1), FGB(1)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Afibrinogenemia Deep vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
FGA(2), FGB(2)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. Cluster 149 →
Deep vein thrombosis Heparin cofactor 2 deficiency
2 genes
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1 of 2 corroborated by 2+ sources
PI4KA(1), SERPIND1(5)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Desmoid tumor Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
CTNNB1(2), APC(6)
0.167 0.667 1.14e-6 6.62e-6 ✓ sig. —
Eating disorder Generalized anxiety disorder
5 genes
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ASB3(1), MGMT(1), TMEM106B(1), ADGRL4(1), IFI44(1)
0.046 0.125 1.12e-6 6.56e-6 ✓ sig. Cluster 69 →
Anorexia Graves ophthalmopathy
3 genes
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3 of 3 corroborated by 2+ sources
IL2(2), TNF(2), IL1RN(2)
0.088 0.167 1.08e-6 6.32e-6 ✓ sig. Cluster 147 →
Digestive system disease Hemorrhoid
7 genes
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NF1(1), ANO1(1), FOXP1(1), ELN(1), TMEM270(1), ABO(1), FAM185A(1)
0.040 0.079 1.07e-6 6.27e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.