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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
B-lymphoblastic leukemia/lymphoma Carcinogenesis
3 genes
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3 of 3 corroborated by 2+ sources
GATA3(2), CDKN2A(2), ABL1(2)
0.086 0.167 1.28e-6 7.40e-6 ✓ sig. Cluster 3 →
Arteriosclerosis Barrett esophagus
5 genes
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3 of 5 corroborated by 2+ sources
APOB(2), MMP12(1), PTGS2(2), MMP1(1), MSR1(5)
0.046 0.122 1.28e-6 7.35e-6 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma Hereditary breast-ovarian cancer syndrome
2 genes
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2 of 2 corroborated by 2+ sources
BRCA2(4), BRCA1(4)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Cadasil Chilblain lupus erythematosus
2 genes
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1 of 2 corroborated by 2+ sources
TREX1(5), ATRIP(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 150 →
Central areolar choroidal dystrophy Retinitis punctata albescens
2 genes
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1 of 2 corroborated by 2+ sources
PRPH2(3), EYS(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 45 →
Cerebrooculofacioskeletal syndrome Uv-sensitive syndrome
2 genes
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1 of 2 corroborated by 2+ sources
ERCC6(6), PGBD3(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Clear cell sarcoma of kidney Endometrial stromal sarcoma
2 genes
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YWHAE(1), NUTM2B(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 223 →
Cyanosis Methemoglobinemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(4), CYB5R3(5)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Cyclin-dependent kinase-like 5 deficiency Retinoschisis
2 genes
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1 of 2 corroborated by 2+ sources
CDKL5(1), RS1(4)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
De lange syndrome Wiedemann-steiner syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SMC1A(3), SMC3(3)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 297 →
Hereditary sensory and motor neuropathy Neuropathy, congenital hypomyelinating
2 genes
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2 of 2 corroborated by 2+ sources
EGR2(3), MPZ(5)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 190 →
Congenital malformation syndromes associated with short stature noonan syndrome with multiple lentigines
2 genes
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2 of 2 corroborated by 2+ sources
BRAF(2), PTPN11(2)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 42 →
Disruptive impulse-control and conduct disorder Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Growth hormone-secreting pituitary adenoma Pituitary neoplasms
2 genes
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PRL(1), GH1(1)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. Cluster 82 →
Aortic arch syndrome Birdshot chorioretinopathy
2 genes
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1 of 2 corroborated by 2+ sources
HLA-B(1), HLA-A(2)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Aplasia cutis congenita Other epidermolysis bullosa
2 genes
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2 of 2 corroborated by 2+ sources
PLEC(3), ITGB4(3)
0.200 0.400 1.26e-6 7.29e-6 ✓ sig. —
Asbestosis Oral submucous fibrosis
3 genes
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2 of 3 corroborated by 2+ sources
GSTT1(2), TNF(2), GSTM1(1)
0.086 0.176 1.26e-6 7.29e-6 ✓ sig. —
Digestive system disease Small cell lung carcinoma
7 genes
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1 of 7 corroborated by 2+ sources
ALDH1A2(1), HLA-DQA1(1), HLA-DRB1(1), NRP1(1), CSF3(2), MARCHF1(1), NEDD9(1)
0.039 0.077 1.25e-6 7.23e-6 ✓ sig. —
Bone disease Female infertility
7 genes
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5 of 7 corroborated by 2+ sources
HLA-DQA1(1), HLA-DRB1(1), CYP19A1(2), ESR1(3), IGF1(2), AHR(2), LEPR(2)
0.039 0.085 1.23e-6 7.12e-6 ✓ sig. —
Barrett esophagus Esophageal neoplasms
6 genes
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6 of 6 corroborated by 2+ sources
CDH13(2), PTGS2(2), CYP26A1(2), NR1I2(2), RPRM(2), SST(2)
0.043 0.083 1.22e-6 7.06e-6 ✓ sig. —
Corneal disease Keratoconus
4 genes
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1 of 4 corroborated by 2+ sources
COL5A1(1), LRP1B(1), RXRA(1), ZNF469(2)
0.033 0.333 1.21e-6 7.01e-6 ✓ sig. —
Cystic kidney disease Senior-loken syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CEP290(6), SDCCAG8(5), INVS(2)
0.081 0.231 1.21e-6 7.00e-6 ✓ sig. Cluster 8 →
Cutaneous lupus erythematosus Membranous glomerulonephritis
3 genes
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2 of 3 corroborated by 2+ sources
0.075 0.273 1.21e-6 6.99e-6 ✓ sig. Cluster 1 →
Aplastic anemia Fanconi anemia
4 genes
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2 of 4 corroborated by 2+ sources
GSTT1(1), TNF(2), GSTM1(1), FANCM(6)
0.059 0.125 1.20e-6 6.96e-6 ✓ sig. —
Diabetes complications Diabetic angiopathies
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), HP(2)
0.079 0.250 1.17e-6 6.80e-6 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.