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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gastroparesis Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Cutaneous lupus erythematosus
2 genes
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2 of 2 corroborated by 2+ sources
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. Cluster 1 →
Paroxysmal atrial fibrillation Short qt syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KCNQ1(6), CACNA2D1(2)
0.143 0.500 2.78e-6 1.51e-5 ✓ sig. —
Secondary malignant neoplasm Systemic mastocytosis
3 genes
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HBE1(1), HBG2(1), OR51B5(1)
0.075 0.158 2.78e-6 1.51e-5 ✓ sig. Cluster 235 →
Congenital stationary night blindness Retinal degeneration
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(4), RHO(4), GNAT1(4)
0.064 0.250 2.77e-6 1.50e-5 ✓ sig. —
Leukodystrophy Tremor-ataxia-central hypomyelination syndrome
2 genes
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1 of 2 corroborated by 2+ sources
POLR3B(1), POLR3A(2)
0.074 1.000 2.74e-6 1.49e-5 ✓ sig. —
Cowchock syndrome Leukodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
AIFM1(2), RAB33A(1)
0.074 1.000 2.74e-6 1.49e-5 ✓ sig. —
Amino acid metabolism disorder propionic acidemia
2 genes
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2 of 2 corroborated by 2+ sources
PCCA(2), PCCB(2)
0.074 1.000 2.74e-6 1.49e-5 ✓ sig. Cluster 83 →
Mitochondrial dna depletion syndrome Mitochondrial myopathy
3 genes
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3 of 3 corroborated by 2+ sources
RRM2B(6), SLC25A4(6), TK2(6)
0.071 0.200 2.69e-6 1.46e-5 ✓ sig. —
Maffucci syndrome Promyelocytic leukemia
3 genes
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3 of 3 corroborated by 2+ sources
IDH2(3), IDH1(4), PTPN11(2)
0.053 0.333 2.67e-6 1.45e-5 ✓ sig. —
Megacystis microcolon intestinal hypoperistalsis syndrome Visceral neuropathy
2 genes
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1 of 2 corroborated by 2+ sources
NDE1(1), ACTG2(6)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 220 →
Chiari-frommel syndrome Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
PRL(2), DRD2(2)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Cockayne syndrome Testicular neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
ERCC1(3), ERCC4(3)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Rickets Vitamin d dependent rickets
2 genes
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2 of 2 corroborated by 2+ sources
VDR(5), CYP27B1(6)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 396 →
46,xx ovotesticular disorder of sex development 46,xy sex reversal
2 genes
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NR5A1(1), SRY(1)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 38 →
46,xy disorder of sex developmen Disorders of sex development
2 genes
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2 of 2 corroborated by 2+ sources
AKR1C2(3), HSD17B3(3)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 344 →
Adenomatous polyposis Focal cortical dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(3), NTHL1(4)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. —
Congenital cystic eyeball Klippel-feil syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GDF6(5), GDF3(5)
0.167 0.333 2.65e-6 1.44e-5 ✓ sig. Cluster 56 →
Concentric hypertrophic cardiomyopathy Polymorphic catecholaminergic ventricular tachycardia
2 genes
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CACNA1C(1), MYBPC3(1)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Macular telangiectasia neurometabolic disorder due to serine deficiency
2 genes
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2 of 2 corroborated by 2+ sources
PHGDH(2), PSPH(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Mitochondrial myopathy Myoclonic epilepsy with ragged red fibers
2 genes
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2 of 2 corroborated by 2+ sources
IL1A(2), IL1B(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. Cluster 32 →
Intracranial aneurysm Intracranial arteriovenous malformation
2 genes
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1 of 2 corroborated by 2+ sources
IL6(2), ENG(1)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Congenital afibrinogenemia Cor pulmonale
2 genes
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2 of 2 corroborated by 2+ sources
FGA(3), FGG(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. Cluster 149 →
Bone osteosarcoma Hereditary breast and ovarian cancer syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHEK2(2), TP53(2)
0.118 0.667 2.66e-6 1.44e-5 ✓ sig. —
Congenital fibrosis of extraocular muscles Cortical development malformation
3 genes
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3 of 3 corroborated by 2+ sources
HRAS(2), TUBB2B(4), TUBA1A(2)
0.073 0.188 2.65e-6 1.44e-5 ✓ sig. Cluster 176 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.