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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Diabetic cardiomyopathy Pancreatic diseases
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), LEPR(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Curling ulcer Hyperemia
2 genes
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2 of 2 corroborated by 2+ sources
PTGS2(2), NOS2(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Ovarian mucinous adenocarcinoma Testicular disease
2 genes
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INHBB(1), PAX8(1)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. —
Congenital thyroid atrophy Testicular disease
2 genes
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2 of 2 corroborated by 2+ sources
PAX8(2), IGSF1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. Cluster 88 →
Congenital hypothyroidism without goiter Testicular disease
2 genes
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2 of 2 corroborated by 2+ sources
PAX8(2), IGSF1(2)
0.105 0.333 1.15e-5 5.64e-5 ✓ sig. Cluster 88 →
Congenital hemivertebra Micrognathism
2 genes
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BLTP1(1), INPP5E(1)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Coffin-siris syndrome Intellectual developmental disorder speech dysmorphic
2 genes
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2 of 2 corroborated by 2+ sources
SMARCA2(4), SOX4(6)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Larsen syndrome Pseudoxanthoma elasticum
2 genes
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2 of 2 corroborated by 2+ sources
XYLT1(2), XYLT2(2)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Eye abnormalities Schizencephaly
2 genes
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2 of 2 corroborated by 2+ sources
SHH(2), COL4A1(2)
0.095 0.400 1.15e-5 5.63e-5 ✓ sig. —
Amyloidosis Learning disorders
3 genes
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3 of 3 corroborated by 2+ sources
APP(2), PSEN1(2), ACHE(2)
0.057 0.158 1.11e-5 5.45e-5 ✓ sig. —
Cerebellar atrophy Hydrolethalus syndrome
2 genes
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1 of 2 corroborated by 2+ sources
HYLS1(7), PUS3(1)
0.063 0.667 1.10e-5 5.41e-5 ✓ sig. —
Charge syndrome Kabuki syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KMT2D(8), KDM6A(7)
0.118 0.222 1.09e-5 5.37e-5 ✓ sig. —
Latent autoimmune diabetes in adults Ocular sarcoidosis
3 genes
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HLA-DQA1(1), HLA-DQB1(1), PFKFB3(1)
0.044 0.250 1.09e-5 5.36e-5 ✓ sig. Cluster 1 →
Anhedonia Dyskinesia
3 genes
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1 of 3 corroborated by 2+ sources
COMT(1), ATP1A3(1), DRD2(2)
0.060 0.115 1.08e-5 5.33e-5 ✓ sig. —
Amphetamine or sympathomimetic abuse Internet addiction disorder
4 genes
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4 of 4 corroborated by 2+ sources
COMT(3), PRKG1(3), DRD4(3), NRG1(3)
0.039 0.143 1.08e-5 5.32e-5 ✓ sig. —
immunodeficiency 104 Severe combined immunodeficiency
2 genes
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2 of 2 corroborated by 2+ sources
IL7R(3), PTPRC(2)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
Muscular dystrophy Sarcoglycanopathies
2 genes
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1 of 2 corroborated by 2+ sources
SGCA(2), SGCG(1)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. Cluster 14 →
Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia Severe combined immunodeficiency
2 genes
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1 of 2 corroborated by 2+ sources
ZBTB25(1), MTHFD1(5)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
Partial adenosine deaminase deficiency Severe combined immunodeficiency
2 genes
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1 of 2 corroborated by 2+ sources
PKIG(1), ADA(7)
0.038 1.000 1.08e-5 5.30e-5 ✓ sig. —
Crest syndrome Waldenstrom macroglobulinemia
2 genes
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EXOC2(1), IRF4(1)
0.083 0.500 1.06e-5 5.23e-5 ✓ sig. —
Charcot-marie-tooth disease, x-linked Deafness, x-linked
2 genes
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2 of 2 corroborated by 2+ sources
PRPS1(6), AIFM1(6)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Eye disorder Mucositis
2 genes
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2 of 2 corroborated by 2+ sources
IL1B(2), MTHFR(2)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Brain atrophy Niemann-pick disease
2 genes
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1 of 2 corroborated by 2+ sources
ACYP1(1), NPC2(8)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Angelman syndrome Prader-willi syndrome
2 genes
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2 of 2 corroborated by 2+ sources
OCA2(2), SNRPN(6)
0.118 0.250 1.06e-5 5.23e-5 ✓ sig. —
Anxiety disorder Dyslexia
8 genes
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5 of 8 corroborated by 2+ sources
APOE(2), EPHA4(1), FOXP2(2), MAPT(3), MARK2(1), STK24(1), DRD4(2), SLC6A3(2)
0.032 0.072 1.04e-5 5.16e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.