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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Carpal tunnel syndrome Pelvic organ prolapse
6 genes
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1 of 6 corroborated by 2+ sources
FBN2(3), EFEMP1(1), LOXL1(1), WNT4(1), EVX2(1), LNPK(1)
0.030 0.095 2.16e-5 1.02e-4 ✓ sig. —
Hyperparathyroidism Hypocalcemia
2 genes
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2 of 2 corroborated by 2+ sources
PTH(2), CASR(7)
0.083 0.333 2.16e-5 1.02e-4 ✓ sig. —
Eyelid disease Neuropathy
2 genes
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EFEMP1(1), PNPT1(1)
0.083 0.333 2.16e-5 1.02e-4 ✓ sig. Cluster 146 →
Dravet syndrome Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(4), GABRA1(3)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. —
Hyperemia Turner syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CAT(2), NOS2(2)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. —
Hyperemia Occupational dermatitis
2 genes
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2 of 2 corroborated by 2+ sources
KNG1(2), BDKRB2(2)
0.095 0.250 2.14e-5 1.01e-4 ✓ sig. Cluster 250 →
Fuchs endothelial dystrophy Polymorphous corneal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
COL8A2(3), ZEB1(3)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 75 →
Fuchs endothelial dystrophy Posterior polymorphous corneal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
COL8A2(4), ZEB1(5)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 75 →
Hyperuricemic nephropathy Polycystic liver disease
2 genes
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1 of 2 corroborated by 2+ sources
HNF1B(1), SEC61A1(3)
0.074 0.400 2.13e-5 1.01e-4 ✓ sig. Cluster 23 →
Hereditary hemorrhagic telangiectasia Hydrops fetalis
2 genes
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RASA1(1), CCNH(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. Cluster 40 →
Hydrops fetalis Klippel-trenaunay syndrome
2 genes
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RASA1(1), CCNH(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. Cluster 40 →
Congenital fibrosis of extraocular muscles Epidermal nevus
2 genes
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1 of 2 corroborated by 2+ sources
HRAS(3), LRRC56(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. —
Klippel-trenaunay syndrome Vacterl association
2 genes
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DLX5(1), SMOC1(1)
0.091 0.286 2.12e-5 1.00e-4 ✓ sig. —
Female infertility Polycystic ovary syndrome
9 genes
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6 of 9 corroborated by 2+ sources
CHEK2(1), DENND1A(1), DMD(3), CYP19A1(2), LEP(2), TNRC6B(3), LHB(2), LIF(2), PROX1(1)
0.028 0.087 2.12e-5 1.00e-4 ✓ sig. —
Cervical polyp Sjogren syndrome
2 genes
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1 of 2 corroborated by 2+ sources
IRAK1BP1(3), MEI4(1)
0.028 1.000 2.10e-5 9.92e-5 ✓ sig. —
Congenital anomalies of the kidney and urinary tract Vacterl association
3 genes
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NOTCH2(1), SALL1(1), TRAP1(1)
0.045 0.188 2.09e-5 9.89e-5 ✓ sig. —
Hepatic encephalopathy Huntington disease
3 genes
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3 of 3 corroborated by 2+ sources
GLUL(2), MAOA(2), MAOB(2)
0.041 0.214 2.09e-5 9.88e-5 ✓ sig. Cluster 57 →
Cryptorchidism Hypospadias
3 genes
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2 of 3 corroborated by 2+ sources
AR(4), KAT6B(1), HSD3B2(2)
0.050 0.150 2.08e-5 9.86e-5 ✓ sig. —
Headache Stomatitis
2 genes
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1 of 2 corroborated by 2+ sources
CSF3(2), IFNA2(1)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Ductal carcinoma Endometrial hyperplasia
2 genes
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2 of 2 corroborated by 2+ sources
PTEN(2), TP53(2)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Dwarfism Meier-gorlin syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ORC1(5), DONSON(2)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. Cluster 171 →
Autoimmune lymphoproliferative disorder Myelomonocytic leukemia
2 genes
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2 of 2 corroborated by 2+ sources
KRAS(2), NRAS(4)
0.100 0.200 2.08e-5 9.86e-5 ✓ sig. —
Primary graft dysfunction Vasculitis
2 genes
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2 of 2 corroborated by 2+ sources
GATA2(2), SENP1(2)
0.063 0.500 2.05e-5 9.72e-5 ✓ sig. Cluster 136 →
Ataxia, spastic, autosomal recessive Spastic ataxia
2 genes
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2 of 2 corroborated by 2+ sources
KIF1C(5), MARS2(5)
0.028 1.000 2.04e-5 9.66e-5 ✓ sig. —
Hyperproinsulinemia Latent autoimmune diabetes in adults
2 genes
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2 of 2 corroborated by 2+ sources
INS(6), INS-IGF2(2)
0.100 0.222 2.00e-5 9.48e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.