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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Atrioventricular septal defect holt-oram syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX5(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 60 →
17q23.1q23.2 microdeletion syndrome Hydronephrosis
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 24 →
Amelia Hydronephrosis
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 24 →
Hyperoxaluria mucopolysaccharidosis type 1
1 gene
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1 of 1 corroborated by 2+ sources
IDUA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 296 →
Angiofollicular ganglionic hyperplasia Hyperoxaluria
1 gene
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1 of 1 corroborated by 2+ sources
IL6(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Eye neoplasms Hypertension and brachydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PDE3A(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets Peptic esophagitis
1 gene
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VDR(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hypophosphatemic rickets Splenic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HRAS(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 18 →
Hypotrichosis simplex Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ductal carcinoma of breast Myhre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Myofibrillar myopathy myofibrillar myopathy 8
1 gene
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1 of 1 corroborated by 2+ sources
PYROXD1(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 4 →
Nanophthalmos nanophthalmos 4
1 gene
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1 of 1 corroborated by 2+ sources
TMEM98(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 56 →
Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidney syndrome Periprosthetic osteolysis
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 394 →
Majewski syndrome nephronophthisis 12
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 22 →
neurodegeneration with brain iron accumulation 4 Urinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular septal defect NR2F2 related multiple congenital anomalies/dysmorphic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NR2F2(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital stationary night blindness NYX-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NYX(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 151 →
obsolete Stüve-Wiedemann syndrome Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
LIFR(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Eye neoplasms oculocutaneous albinism type 1
1 gene
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1 of 1 corroborated by 2+ sources
TYR(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Duane retraction syndrome Osteoma cutis
1 gene
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GNAS(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ovarian dysgenesis Ovarian teratoma
1 gene
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1 of 1 corroborated by 2+ sources
BMP15(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 38 →
Cachexia lymphoproliferative syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CD27(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 76 →
Maleylacetoacetate isomerase deficiency Vestibular disease
1 gene
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1 of 1 corroborated by 2+ sources
GSTZ1(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
MCM9-related gametogenic failure Ovarian dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 38 →
familial thoracic aortic aneurysm and aortic dissection meester-loeys syndrome
1 gene
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BGN(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.