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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Craniopharyngioma Hepatoblastoma
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Horizontal gaze palsy with progressive scoliosis Mirror movements
1 gene
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1 of 1 corroborated by 2+ sources
DCC(6)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Hypercapnia Urination disorders
1 gene
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1 of 1 corroborated by 2+ sources
NPPA(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Hyperexplexia hereditary Retinitis pigmentosa, juvenile cataract, short stature, intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 379 →
17q11 microdeletion syndrome Middle aortic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NF1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 77 →
17q11 microdeletion syndrome Neurofibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
NF1(6)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 77 →
22q13 monosomy syndrome Dystonia, dopa-responsive, with or without hyperphenylalaninemia
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 112 →
22q13.3 deletion syndrome X-linked diffuse leiomyomatosis with alport syndrome
1 gene
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COL4A5(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
22q13.3 deletion syndrome Hyperkalemia
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 112 →
Acrofacial dysostosis Burn-mckeown syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR1A(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Amed syndrome Cardiac injury
1 gene
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1 of 1 corroborated by 2+ sources
ALDH2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Anaplastic oligodendroglioma Central nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Anauxetic dysplasia Cartilage-hair hypoplasia
1 gene
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CCDC107(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Androgen insensitivity syndrome Male breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
AR(7)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 193 →
Angiomatoid fibrous histiocytoma Extraskeletal ewing sarcoma
1 gene
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EWSR1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Anti-glomerular basement membrane disease Thromboangiitis obliterans
1 gene
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0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 1 →
Antisocial personality disorder Familial mediterranean fever
1 gene
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ABCB1(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 57 →
Aortic atherosclerosis Combined molybdoflavoprotein enzyme deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DAAM2(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. —
Apolipoprotein b hypobetalipoproteinemia Autoimmune pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 1 →
Apolipoprotein b hypobetalipoproteinemia Tongue cancer
1 gene
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0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 1 →
Catel-manzke syndrome Vertebral, cardiac, renal, and limb defects syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KYNU(5)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 386 →
Bile duct calculus Cavitary optic disk anomaly
1 gene
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APOE(1)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 177 →
Cecal neoplasms Craniopharyngioma
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Cecal neoplasms Osteopathia striata with cranial sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →
Cecal neoplasms Vascular calcification
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.167 0.500 5.19e-4 1.06e-3 ✓ sig. Cluster 104 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.