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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Atrial and intestinal dysrhythmia Chronobiology disorder
1 gene
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1 of 1 corroborated by 2+ sources
SGO1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 191 →
Atypical multiple mole melanoma syndrome Brain stem neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 384 →
Auriculocondylar syndrome Urinary retention
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 74 →
Autoinflammation, antibody deficiency, and immune dysregulation Cryopyrin-associated periodic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PLCG2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 192 →
autosomal dominant slowed nerve conduction velocity Genetic peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
autosomal dominant slowed nerve conduction velocity Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Avoidant restrictive food intake disorder Bile duct calculus
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 177 →
Basal cell nevus syndrome Culler-jones syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 212 →
Basal cell nevus syndrome Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 212 →
BBS9-related ciliopathy Post-operative stroke
1 gene
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1 of 1 corroborated by 2+ sources
BBS9(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Benign fasciculation-cramp syndrome Genetic peripheral neuropathy
1 gene
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TRPA1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Benign fasciculation-cramp syndrome Overactive bladder
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
Benign neonatal epilepsy fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Benign neonatal epilepsy hemiplegic migraine-developmental and epileptic encephalopathy spectrum
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Benign neonatal epilepsy neonatal-onset developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ2(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 165 →
Benign samaritan congenital myopathy Sacral agenesis
1 gene
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1 of 1 corroborated by 2+ sources
RYR1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Benta disease Osteopenia
1 gene
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1 of 1 corroborated by 2+ sources
CARD11(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 327 →
Bestrophinopathy PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Bestrophinopathy hemochromatosis type 5
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Beta-aminoisobutyric aciduria Mild cognitive impairment
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Beta2-microglobulinic amyloidosis Visceral amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
B2M(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 228 →
Developmental delay with facial dysmorphism syndrome Discordant ventriculoarterial connection
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diabetes insipidus Hereditary arginine vasopressin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
AVP(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diabetes insipidus Eye pain
1 gene
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1 of 1 corroborated by 2+ sources
POMC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Diffuse gastric and lobular breast cancer syndrome Patterned macular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CTNNA1(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.